Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0420
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3147| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_57435| Best HMM Match : Ricin_B_lectin (HMM E-Value=1.4e-22)        29   3.1  
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_6687| Best HMM Match : DedA (HMM E-Value=4.1)                       27   9.5  

>SB_3147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +1

Query: 331 CHIKYFSFFETR-GTQYY-WVTGSHVNTTTRLKHEIEIS 441
           C  KYF+  + + GT  + W T   V+T+ RL+H +E+S
Sbjct: 113 CDAKYFTLIDAKKGTGTFPWTT--EVHTSQRLEHHLEVS 149


>SB_57435| Best HMM Match : Ricin_B_lectin (HMM E-Value=1.4e-22)
          Length = 472

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 212 NQKFSSFISVLLDHNIICLGLNKLGKYTDFIEISD 316
           NQ +S   S LL H  +CLG+N  GK T+ +++ D
Sbjct: 381 NQMWSLTKSSLLKHETMCLGVND-GKATEPVQLLD 414


>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 363 QGDPV-LLGYRITCEYHHPP*A*NRNLNCIQIQ 458
           +G P+ +LGY I  EY  P     ++ NC++IQ
Sbjct: 393 KGGPLKVLGYNIGVEYSRPKEGQEKDWNCVKIQ 425


>SB_6687| Best HMM Match : DedA (HMM E-Value=4.1)
          Length = 295

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -2

Query: 209 NSIVRCIIRRIKLNCRKL*LVQFRFHFYFSRYTCS 105
           +++VR + + +K+N R + +  F++ F F   TCS
Sbjct: 249 STVVRMLAKELKVNRRAILIENFKYIFSFLVRTCS 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,799,459
Number of Sequences: 59808
Number of extensions: 373155
Number of successful extensions: 707
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)