Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0420
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35637-2|CAA84688.1|  381|Caenorhabditis elegans Hypothetical pr...    31   0.90 
Z99710-12|CAI79158.1|  333|Caenorhabditis elegans Hypothetical p...    29   2.7  
AL034393-28|CAI79175.1|  333|Caenorhabditis elegans Hypothetical...    29   2.7  
AF078157-18|AAG24080.1|  338|Caenorhabditis elegans Seven tm rec...    28   4.8  
AF040655-6|AAB95043.2|  296|Caenorhabditis elegans Serpentine re...    27   8.4  

>Z35637-2|CAA84688.1|  381|Caenorhabditis elegans Hypothetical
           protein C03C10.3 protein.
          Length = 381

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 224 SSFISVLLDHNIICLGLNKLGKYTDFIEISDSITIDATLNIF 349
           S +I  + DH ++ LG +KL K  +  +  ++I+ID   N F
Sbjct: 313 SQYIEFVADHLLVELGCDKLYKSKNPFDFMENISIDGKTNFF 354


>Z99710-12|CAI79158.1|  333|Caenorhabditis elegans Hypothetical
           protein Y18D10A.22 protein.
          Length = 333

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 378 LLGYRITCEYHHPP*A*NRNLNCIQIQILKGXTRLMISLRSDIQA 512
           LL  R+T  + HP    N +L   Q+QIL+G    M+ + SD+ +
Sbjct: 113 LLHDRVTFHHKHPFFPGNLDLTNSQMQILQGNVVKMLEITSDLMS 157


>AL034393-28|CAI79175.1|  333|Caenorhabditis elegans Hypothetical
           protein Y18D10A.22 protein.
          Length = 333

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 378 LLGYRITCEYHHPP*A*NRNLNCIQIQILKGXTRLMISLRSDIQA 512
           LL  R+T  + HP    N +L   Q+QIL+G    M+ + SD+ +
Sbjct: 113 LLHDRVTFHHKHPFFPGNLDLTNSQMQILQGNVVKMLEITSDLMS 157


>AF078157-18|AAG24080.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 28 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 200 RWNLNQKFSSFISVLLDHNIICL 268
           RWN    FS F+ +LL   +ICL
Sbjct: 195 RWNSVSTFSMFVVILLTQYVICL 217


>AF040655-6|AAB95043.2|  296|Caenorhabditis elegans Serpentine
           receptor, class x protein112 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 22/79 (27%), Positives = 39/79 (49%)
 Frame = +1

Query: 346 FSFFETRGTQYYWVTGSHVNTTTRLKHEIEISIAFKFKS*KGIPAL*FLCAPISKRHASM 525
           F+FFE      ++ T S   T   +K+ +  S+A        + A+  +   +S+   S+
Sbjct: 152 FAFFE----HTFYTTASCSTTMFWIKNYVVFSLAAVTNFLNLMMAVKLVV--VSRTQKSI 205

Query: 526 NSSTYQRKNRSII*YFFQS 582
           +S  YQR+ +  I +FFQS
Sbjct: 206 SSVAYQRRRKRSIKFFFQS 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,285,217
Number of Sequences: 27780
Number of extensions: 300449
Number of successful extensions: 674
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)