Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0420
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.3  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   7.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.5  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 85  QSVHTTLEHVYLLK*KWNRN*TNYNLRQF--NFILRMIQ 195
           +++H    + Y    K+N N  NYN + +  N+I+ + Q
Sbjct: 88  KTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQ 126


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 508 KRHASMNSSTY 540
           +RH SMNS+TY
Sbjct: 240 RRHYSMNSTTY 250


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 326 WLCYLKFQ*NPCIFRVY 276
           WL Y     NPCI+ ++
Sbjct: 49  WLGYCNSAINPCIYALF 65


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 326 WLCYLKFQ*NPCIFRVY 276
           WL Y     NPCI+ ++
Sbjct: 497 WLGYCNSAINPCIYALF 513


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,364
Number of Sequences: 438
Number of extensions: 3565
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)