Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0420
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01080.1 68417.m00146 expressed protein                             27   7.8  
At3g17620.1 68416.m02251 F-box family protein contains Pfam prof...    27   7.8  

>At4g01080.1 68417.m00146 expressed protein 
          Length = 442

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 319 HNHRCHIKYFSFFETRGTQYYWVTGS 396
           H HR  +K+F +F      YY++  S
Sbjct: 43  HRHRTFVKFFLYFSLVALAYYFIISS 68


>At3g17620.1 68416.m02251 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 398

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +1

Query: 364 RGTQYYWVTGSHVNTTTRLKHEIEISIAFKFKS*KGIPAL*FLCAPISKRHASMNS 531
           +G  Y++ T      ++ L H +   + F F S +  P L   C P+     S++S
Sbjct: 209 KGNTYWFATDKFPEISSNLIHSVYFLLCFNFTSERFGPRLHLPCYPMDVDTVSLSS 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,377,507
Number of Sequences: 28952
Number of extensions: 273210
Number of successful extensions: 594
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)