Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0418
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   2.9  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    26   3.8  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   5.0  
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    25   5.0  
SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase comp...    25   5.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   8.7  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    25   8.7  

>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 150 KEVNVSNSNAQAVFVDTRSVGVNNFNVLSIVCSQ 49
           +E ++S ++  ++FV   S  VN F+V S+  S+
Sbjct: 176 REKSISKASEYSIFVGDLSPNVNEFDVYSLFASR 209


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 168 DKTSVDKEVNVSNSNAQAV--FVDTRSVGVNNFN 73
           DK +  K+  V NSN +++  F    ++G+N+FN
Sbjct: 72  DKKTEFKQDEVPNSNGKSIPTFHPCNNIGINDFN 105


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 388 WN-GYLMPVFTRNIPDPCFTSLAV-PISTINPRQLFAVISASVLH*FRNV 245
           WN G+L      NIP+  F  L++ PI       LF  IS S LH FR++
Sbjct: 303 WNVGFLRYWTLNNIPNFLFALLSIIPILFA----LFYSISGSTLHSFRSI 348


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 391 KWNGYLMPVFTRNIPDPCFTSL 326
           K +GY+ P+F   +P  CF SL
Sbjct: 374 KKSGYMQPLFDLTMPLGCFDSL 395


>SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase complex
           II subunit Rpb7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 76  EVIHTDGSGVNKNGLGVAIGHIDFFVNGRLVQP 174
           EV+    + VNK G    IG ++ FV+  LV P
Sbjct: 86  EVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPP 118


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 276 EITANNCRGFIVEMGTAKLVKHGSG 350
           E+T+ NC G ++      L K GSG
Sbjct: 689 EVTSVNCTGIVLSFCCDNLAKIGSG 713


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 362 KYRHEVPIPFVMPTK 406
           KYRHE P+  V+P K
Sbjct: 271 KYRHEQPLHIVVPEK 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,062,808
Number of Sequences: 5004
Number of extensions: 42166
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)