Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0418
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544...    30   1.2  
10_08_1053 - 22575281-22575409,22575516-22575653,22575786-225758...    28   5.0  
01_05_0571 + 23353319-23354293,23354431-23354574,23354684-23355052     27   8.8  
01_01_0363 + 2850954-2853675,2853819-2854225                           27   8.8  

>04_03_1018 +
           21753634-21753640,21754282-21754315,21754413-21754432,
           21754485-21755782
          Length = 452

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 94  GSGVNKNGLGVAIGHIDFFVNGRLVQPGCTNNLCSHNRAYEVFAAT 231
           G  ++   +G  +GH+ +  +G+    GC   + S   A E  AA+
Sbjct: 320 GGAIHHGAVGALLGHLSWAASGKCASGGCAGAVPSALAAVEALAAS 365


>10_08_1053 -
           22575281-22575409,22575516-22575653,22575786-22575884,
           22576281-22576361,22577171-22577233,22577473-22577520,
           22577622-22577990,22578082-22578183,22578290-22578414,
           22578500-22578566,22578817-22578895,22578928-22579079,
           22579182-22579223
          Length = 497

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 374 HAGIYSEHSRPMLYKFGSTHFNYKSSAIICGYLRFCAALIP*CLPCVIVAA 222
           H    SE + P+L    + H +Y+ SA I  ++     L+P  LPC +  A
Sbjct: 23  HGDCESESTAPLLL---APHESYRLSAAILPWVPLLLLLLPPLLPCFLFPA 70


>01_05_0571 + 23353319-23354293,23354431-23354574,23354684-23355052
          Length = 495

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 73  RIEHRLFPVVVRCFPNHE 20
           R E +L PV +RCFPN E
Sbjct: 351 RNEAKLLPVFLRCFPNVE 368


>01_01_0363 + 2850954-2853675,2853819-2854225
          Length = 1042

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 88  CE*LQRIEHRLFPVVVRCFPNHEPKG 11
           CE L+R+ HR    ++ C  + +P+G
Sbjct: 767 CEALRRVRHRCLTKIITCCSSIDPQG 792


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,495,536
Number of Sequences: 37544
Number of extensions: 286770
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)