Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0418
(509 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 1e-08
SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07) 52 3e-07
SB_26408| Best HMM Match : Lipase (HMM E-Value=0) 52 3e-07
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41) 42 2e-04
SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38) 29 1.7
SB_27171| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31) 28 3.9
SB_6738| Best HMM Match : DUF1328 (HMM E-Value=2.4) 27 9.0
SB_6395| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 940
Score = 56.4 bits (130), Expect = 1e-08
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 10/89 (11%)
Frame = +1
Query: 1 TGLDPSARDWEN-NV-LRLGTNDAQYVEVIHTDGSGVNKNGLGVAIGHIDFFVNGRLVQP 174
TGLDP++ + N +V +RL +DA +V+V+HTD ++ G GHIDF+ NG QP
Sbjct: 719 TGLDPASIHFVNAHVDVRLDPSDADFVDVMHTD---MDLAGTPTVSGHIDFYPNGGKKQP 775
Query: 175 GCTNNL--------CSHNRAYEVFAATIT 237
GC + L C H RA E +A ++T
Sbjct: 776 GCRDLLDGPINYVICDHMRAPEYYAESVT 804
>SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)
Length = 408
Score = 52.0 bits (119), Expect = 3e-07
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 10/87 (11%)
Frame = +1
Query: 7 LDPSARDWENNVL--RLGTNDAQYVEVIHTDGSGVNKNGLGVAIGHIDFFVNGRLVQPGC 180
LDP+ + N + RL +DA++V+V+HTD ++ G GHIDF+ NG QPGC
Sbjct: 2 LDPAGLYFVNEHVDVRLDPSDAEFVDVMHTD---MDFAGTSTQSGHIDFYPNGGKNQPGC 58
Query: 181 -------TNNL-CSHNRAYEVFAATIT 237
+N L C H RA++ F +IT
Sbjct: 59 RDIADGPSNALKCDHVRAHDYFTESIT 85
>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
Length = 714
Score = 52.0 bits (119), Expect = 3e-07
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Frame = +1
Query: 1 TGLDPSARDW---ENNVLRLGTNDAQYVEVIHTDGSGVNKNGLGVAIGHIDFFVNGRLVQ 171
T LDP+A W + +RL T+DA +V+VIHT G+ IGH DF+ NG Q
Sbjct: 221 TALDPAAM-WFHKHHEDVRLDTSDALFVDVIHTSAD----YGITSTIGHADFYPNGGKKQ 275
Query: 172 PGCTN--------NLCSHNRAYEVFAATI 234
PGC N C H RA +F ++
Sbjct: 276 PGCDNFFRGFSSYLFCGHKRAPALFTTSL 304
>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
Length = 291
Score = 42.3 bits (95), Expect = 2e-04
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +1
Query: 1 TGLDPSARDWENNV--LRLGTNDAQYVEVIHTDGSGVNKNGLGVAIGHIDFFVNGRLVQP 174
TGLDP+ ++ +RL DAQ+V+VIHT G+ GH+DF+ NG Q
Sbjct: 203 TGLDPATLMFKGEAPDVRLDRLDAQFVDVIHTS----YVFGITAPHGHMDFYPNGGTSQR 258
Query: 175 GCT 183
GC+
Sbjct: 259 GCS 261
>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
Length = 450
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 176 PGWTRRPLTKKSMC-PIATPKPFLLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAEGSRP 3
P +P+ +C P+ +P P +++P P I + + VP+ TL QS A P
Sbjct: 193 PSPASQPVAPSPVCIPVQSPAPNMMSPSPQQFIAQSPAPTSVPTPGTLNVQSPASILNP 251
>SB_27171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +1
Query: 109 KNGLGVAIG---HIDFFVNGRLVQPGCTNNLCSHNRA 210
K+ G+ IG H+D VNG VQ C+HN+A
Sbjct: 12 KSSEGMYIGADLHLDKDVNGAYVQGSFIGGFCTHNKA 48
>SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)
Length = 778
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 451 VETNFIGHHRKLRFKFCRHHKWN 383
VE NF+GH R+ R CR K N
Sbjct: 233 VERNFVGHRRRCRRVVCRATKSN 255
>SB_6738| Best HMM Match : DUF1328 (HMM E-Value=2.4)
Length = 391
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -1
Query: 260 LIP*CLPCVIVAAKTS*ARLWLHKL--FVQPGW 168
+IP C PC+ AA T L L KL F++ W
Sbjct: 284 MIPFCYPCIRAAALTDTCDLILEKLCYFLEADW 316
>SB_6395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1093
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 352 IPDPCFTSLA-VPISTINPRQLFAVISASVLH*FRNVCHA*LLQQKLHKRGCGYIS 188
IP PC+ P+S I+ L V V H FR V L +++HK+ CG ++
Sbjct: 571 IPPPCYGQFVNKPLSNID--LLKWVTKLGVEH-FRGVYSRDDLPKRIHKKECGIVN 623
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,744,634
Number of Sequences: 59808
Number of extensions: 335399
Number of successful extensions: 796
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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