Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0418
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024796-2|AAK29892.2|  446|Caenorhabditis elegans Hypothetical ...    30   0.85 
Z99169-1|CAB16306.2|  966|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AB055112-1|BAB62293.1|  966|Caenorhabditis elegans VHA-7 protein.      29   2.0  
Z83239-9|CAB05811.1|  517|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z81099-4|CAB03189.1|  517|Caenorhabditis elegans Hypothetical pr...    28   3.4  

>AC024796-2|AAK29892.2|  446|Caenorhabditis elegans Hypothetical
           protein Y48G1C.4 protein.
          Length = 446

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -1

Query: 386 EWVPHA-GIYSEHSRPMLYKFGSTHFNYKS 300
           EW  HA G+++EH+  ++   GS+++ Y+S
Sbjct: 354 EWTFHAKGLWAEHNNQLMTLIGSSNYGYRS 383


>Z99169-1|CAB16306.2|  966|Caenorhabditis elegans Hypothetical
           protein C26H9A.1 protein.
          Length = 966

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 100 QIRRCE*LQRIEHRLFPVVVRCFPNHEPKGLD 5
           Q+RRCE ++R    L   V+ C P  +PK +D
Sbjct: 98  QMRRCEEMERKLRFLEKQVITCKPGLDPKSID 129


>AB055112-1|BAB62293.1|  966|Caenorhabditis elegans VHA-7 protein.
          Length = 966

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 100 QIRRCE*LQRIEHRLFPVVVRCFPNHEPKGLD 5
           Q+RRCE ++R    L   V+ C P  +PK +D
Sbjct: 98  QMRRCEEMERKLRFLEKQVITCKPGLDPKSID 129


>Z83239-9|CAB05811.1|  517|Caenorhabditis elegans Hypothetical
           protein K08F9.4 protein.
          Length = 517

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 204 PRL*SFCCNNYAWQTLRNQCSTEAEITANN 293
           P+  +FC NN+ W+  R +C  E  IT  N
Sbjct: 259 PKRNTFCTNNFNWKIFRKKC-RENSITPPN 287


>Z81099-4|CAB03189.1|  517|Caenorhabditis elegans Hypothetical
           protein K08F9.4 protein.
          Length = 517

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 204 PRL*SFCCNNYAWQTLRNQCSTEAEITANN 293
           P+  +FC NN+ W+  R +C  E  IT  N
Sbjct: 259 PKRNTFCTNNFNWKIFRKKC-RENSITPPN 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,672,660
Number of Sequences: 27780
Number of extensions: 248437
Number of successful extensions: 620
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)