Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0418
         (509 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containi...    32   0.26 
At3g26480.1 68416.m03301 transducin family protein / WD-40 repea...    28   3.2  
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)...    28   4.2  
At5g24750.1 68418.m02921 expressed protein                             27   7.3  
At4g00350.1 68417.m00046 MATE efflux family protein similar to r...    27   7.3  
At3g49200.1 68416.m05377 hypothetical protein                          27   7.3  
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ...    27   7.3  
At3g49190.1 68416.m05376 condensation domain-containing protein ...    27   9.7  
At3g13220.1 68416.m01654 ABC transporter family protein contains...    27   9.7  
At2g35910.1 68415.m04408 zinc finger (C3HC4-type RING finger) fa...    27   9.7  
At1g49590.1 68414.m05560 formin-binding protein-related similar ...    27   9.7  

>At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile: PF00515 TPR Domain (5
           copies)
          Length = 1064

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 233 LRMANITESVQHRSGDNRK*LPRIYS*NGYCQTCKAWVWNVPSKYRHE 376
           L+M NI ES+ H    +   LP  Y   G+ Q C+A+  N  +K   E
Sbjct: 847 LQMGNIAESINHARKASSLSLPSSYLFLGHLQLCRAYAANGSTKNMQE 894


>At3g26480.1 68416.m03301 transducin family protein / WD-40 repeat
           family protein contains Pfam profile: PF00400 WD domain,
           G-beta repeat (5 copies, 2 below cutoff); related to
           LACK protective antigen (GI:13625467) [Leishmania
           donovani]
          Length = 764

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
 Frame = +2

Query: 185 ITYVAT---TALMKFLLQQLRMANITESVQHRSGDNRK*L----PRIYS*NG----YCQT 331
           I YV+    +++ K L  Q+R  ++T+   H SGD  K +    P + S +G     C  
Sbjct: 111 IAYVSVEDYSSVSKDLFGQIRRYDLTQDPLH-SGDTLKEMEEPKPIVLSPSGEFFGVCHN 169

Query: 332 CKAWVWNVPSKYRHEVPIPFVM-PTKLKTKFSVMTNK 439
           C   +WNV S+  H +P    +  T+L T F+   N+
Sbjct: 170 CSIHIWNVASE--HLMPKETTLHHTELITVFAFHPNQ 204


>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
           identical to SP|O65607 DNA mismatch repair protein MSH3
           (AtMsh3) {Arabidopsis thaliana}
          Length = 1081

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = +1

Query: 34  NNVLRLGTNDAQYVEVIHTDGSGVNKNGLGVAIGHIDFFVNGRLVQPGCTNNLCSHN 204
           N  + L  N  Q +EV+  +  G     L   + H       RL++   T+ LC  N
Sbjct: 417 NTEMTLSANTLQQLEVVKNNSDGSESGSLFHNMNHTLTVYGSRLLRHWVTHPLCDRN 473


>At5g24750.1 68418.m02921 expressed protein
          Length = 520

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 154 NGRLVQPGCTNNLCSHNRAYEVFAATITHGKHYGISAAQKRR*PQII 294
           NG+L    C + +  +N  +   AA I HG    ++AA +   PQII
Sbjct: 380 NGKLF---CFSGMVPYNWMFRTCAAAIHHGGSGSVAAALQAGIPQII 423


>At4g00350.1 68417.m00046 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554
           Uncharacterized membrane protein family
          Length = 542

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -3

Query: 441 ILLVITENFVLSFV-GITNGMGTSCRYLLGTFQTHALQVWQYPFQL*ILGNYLRLSPL 271
           I L +  NF   F+ G+ + + T C    G  Q   L V+     L +LG  + L PL
Sbjct: 130 IALSVVSNFSFGFLLGMASALETLCGQAFGAGQMDMLGVYMQRSWLILLGTSVCLLPL 187


>At3g49200.1 68416.m05377 hypothetical protein
          Length = 507

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +1

Query: 7   LDPSARDWENNVLRLGTNDAQYVEVI---HTDGSGVNKNGLGVA 129
           LD S   WE ++L L T+DA+ V V+   H+ G G++   L +A
Sbjct: 132 LDTSKPLWEVHLLDLKTSDAENVAVLRIHHSLGDGMSMMSLVLA 175


>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 679

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 320 YCQTCKAWVWNVPSKYRHEVPIPFVMPTKLKTKFS 424
           +C TC+     V + Y HE+  PF     LK  FS
Sbjct: 110 HCPTCEMCYHKVCNLYPHEIRHPFHAQHPLKLTFS 144


>At3g49190.1 68416.m05376 condensation domain-containing protein
           contains Pfam profile PF00668: Condensation domain
          Length = 522

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +1

Query: 7   LDPSARDWENNVLRLGTNDAQYVEVI---HTDGSGVNKNGLGVA 129
           LD S   WE ++L L T+DA+ V V+   H+ G G++   L +A
Sbjct: 120 LDTSRPLWELHLLDLKTSDAENVAVLKIHHSVGDGMSIMSLVLA 163


>At3g13220.1 68416.m01654 ABC transporter family protein contains
           Pfam profile: PF00005 ABC transporter; similar to white
           protein GB:Q27256 [Anopheles gambiae]
          Length = 685

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 379 YLMPVFTRNIPDPCFTSLAVPISTINPRQLFAVISASVL 263
           Y M  F RNIP   FT L + +  I  +     + ASVL
Sbjct: 533 YFMAEFNRNIPCFLFTVLTILLIAITSQGAGEFLGASVL 571


>At2g35910.1 68415.m04408 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 zinc finger
           protein ATL6 [Arabidopsis thaliana] GI:4928403; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 217

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +1

Query: 70  YVEVIHTDGSGVNKNGLGVAIGHIDFFVNGRLVQPGCTNNLCSHNRAYEVFAATITHGKH 249
           Y  ++ TD  G  + G+GV+IG +       L    CT N  S + +     +T  H  H
Sbjct: 52  YNGLLGTDDIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHH 111

Query: 250 YGI 258
           + +
Sbjct: 112 HHV 114


>At1g49590.1 68414.m05560 formin-binding protein-related similar to
           formin binding protein 21 (GI:3550080) [Homo sapiens];
           similar to formin binding protein 21 (GI:3550077) [Mus
           musculus]; similar to Dinap1-interacting protein 1
           (GI:8745458) [Crypthecodinium cohnii]
          Length = 242

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 314 NGYCQTCKAWVWNVPSKYRH 373
           N +C+ CK W+ N P+  R+
Sbjct: 10  NKWCEFCKIWIQNNPTSIRN 29


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,843,448
Number of Sequences: 28952
Number of extensions: 224864
Number of successful extensions: 534
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)