Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0416
(737 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 2e-29
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.) 110 1e-24
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37) 39 0.004
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) 37 0.015
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0) 33 0.18
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39) 31 0.97
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_37975| Best HMM Match : UBA (HMM E-Value=4.6e-10) 30 2.3
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) 30 2.3
SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07) 30 2.3
SB_3663| Best HMM Match : MBT (HMM E-Value=0) 28 9.1
SB_27515| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1107
Score = 126 bits (303), Expect = 2e-29
Identities = 59/94 (62%), Positives = 71/94 (75%)
Frame = +2
Query: 227 ERKGGKRLYFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTV 406
E++ G LN+ F + +PF+PPFVRV YP+I GYVL GGAICMELLT QGWSSAYT+
Sbjct: 565 EKQEGIDHILLNMTFTDKFPFDPPFVRVCYPVIQAGYVLSGGAICMELLTPQGWSSAYTI 624
Query: 407 EAVIMQIAATLVKGKARIQFSATKVVSQTQYSLA 508
EAVI+QI+ATLVKGKARI F TK V + +A
Sbjct: 625 EAVIVQISATLVKGKARINFQDTKKVLGLSFKMA 658
>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 110 bits (264), Expect = 1e-24
Identities = 50/86 (58%), Positives = 63/86 (73%)
Frame = +2
Query: 239 GKRLYFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVI 418
G + LNI F E +PF PPF+RV+ P I GG+VL GGAICMELLT +GWSSAYTVEAV+
Sbjct: 787 GSKFILLNITFPENFPFAPPFMRVLAPRIEGGFVLDGGAICMELLTPKGWSSAYTVEAVV 846
Query: 419 MQIAATLVKGKARIQFSATKVVSQTQ 496
+Q +A +VKGK RI + K S+ +
Sbjct: 847 LQFSAAVVKGKGRIDRTCKKAFSKKE 872
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/48 (45%), Positives = 34/48 (70%)
Frame = +3
Query: 72 RLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSTLHND 215
RLMKE +D+ R ++S ELV+D+L+EWN++L ++D DS L+ D
Sbjct: 738 RLMKEFQDVSRK---TERIFSAELVDDNLFEWNVKLHTIDGDSLLYRD 782
Score = 36.3 bits (80), Expect = 0.026
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1
Query: 511 AQQSFKCLVQIHEKNGWFTPPKEDG 585
A+ ++K LV+ H+K GW TPPK +G
Sbjct: 873 AESAYKRLVKTHDKYGWVTPPKAEG 897
>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Frame = +2
Query: 200 YTTQRPPPAERKGGKRLYFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLT- 376
+T + PP E GG+ Y II YP +PP + ++ P G +G IC+ +
Sbjct: 43 FTVRGPPDTEFAGGR--YHGRIILPPEYPMKPPSIMLLTP---NGRFEIGKKICLSMSAH 97
Query: 377 -KQGWSSAYTVEAVIMQIAATL-VKGKARI 460
+ W ++++ V+M I + KG I
Sbjct: 98 HPETWQPSWSIRTVLMAIIGFMPTKGAGAI 127
>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
Length = 190
Score = 39.1 bits (87), Expect = 0.004
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +2
Query: 242 KRLYFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELL---TKQGWSSAYTVEA 412
K ++ L+I E YPFEPP VR V PI + G IC++ L K W A + +
Sbjct: 12 KGIFKLDIQIPERYPFEPPKVRFVTPIYHPN-IDSSGRICLDTLKMPPKGMWKPALNISS 70
Query: 413 VIMQI 427
V+ I
Sbjct: 71 VLSTI 75
>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 226
Score = 37.1 bits (82), Expect = 0.015
Identities = 24/75 (32%), Positives = 38/75 (50%)
Frame = +2
Query: 215 PPPAERKGGKRLYFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSS 394
PP + +GG ++FL+I F YPF+PP G +C+++L K WS
Sbjct: 134 PPGSVYEGG--VFFLDIHFPSDYPFKPP----------------KGMVCLDIL-KDSWSP 174
Query: 395 AYTVEAVIMQIAATL 439
A T+ V++ I + L
Sbjct: 175 ALTISKVLLSICSLL 189
>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 145
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +2
Query: 242 KRLYFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIM 421
K + + I F YPF+PP + I + G +C+ +++ + W A E VI
Sbjct: 39 KGAFRIEICFPAEYPFKPPKITFKTKIYHPN-IDEKGQVCLPIISPENWKPATKTEQVIQ 97
Query: 422 QIAA 433
+ A
Sbjct: 98 ALLA 101
>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
Length = 841
Score = 31.1 bits (67), Expect = 0.97
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 215 PPPAERKGGKRLYFLNIIFKETYPFEPP 298
PP +GG Y L+I+ ETYPF PP
Sbjct: 696 PPETPFEGGT--YNLDIVIPETYPFNPP 721
>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 214 TSSC*KKRREKTLFSQHYIQGNLSIRAAFCACCLSYNLRRLCISRRCDMYGAINEARL 387
++ C +KR+EK L + + + S++ C N++RLC + CD G E L
Sbjct: 1125 SNGCREKRQEKLLVANAHSK---SLKLFEKQSCTDRNVKRLCPKKNCDWVGVKLERHL 1179
>SB_37975| Best HMM Match : UBA (HMM E-Value=4.6e-10)
Length = 473
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +2
Query: 383 GWSSAYTVEAVIMQIAATLVKGKARIQFSATKVVSQTQYSLAVHSRASNVLFRYMRKMAG 562
G+S EA+ L K A+ +F A+ + S + HSR N+ K+ G
Sbjct: 54 GFSKPTIAEALEHLRTHALEKLSAKKRFQASGLASIRVHLAGQHSRKMNM--EISLKLTG 111
Query: 563 SHLRKRMGN 589
+ LRKR+G+
Sbjct: 112 AELRKRLGD 120
>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
Length = 200
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 215 PPPAERKGGKRLYFLNIIFKETYPFEPP 298
PP + +GG ++FL+I F YPF+PP
Sbjct: 174 PPGSVYEGG--VFFLDIHFPSDYPFKPP 199
>SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)
Length = 181
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 215 PPPAERKGGKRLYFLNIIFKETYPFEPPFV 304
PP + +GG ++FL+I F YPF+PP V
Sbjct: 61 PPGSVYEGG--VFFLDIHFPTDYPFKPPKV 88
>SB_3663| Best HMM Match : MBT (HMM E-Value=0)
Length = 327
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 234 FLSAGGGRCVVYCQDPQSAV*CSIHIVSRLLIQW 133
FL G GR +Y + + + C + V R+ I W
Sbjct: 247 FLKPGNGRATIYARSNKQVMSCVLQHVDRVSIFW 280
>SB_27515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 455 RIQFSATKVVSQTQYSLAVHSRASNVLFRYMRKMAGSHLR 574
R F V T S+ +H + + F + AGSHLR
Sbjct: 15 RFHFDTDSTVHTTDQSIRIHLDSLSTAFSKVSGFAGSHLR 54
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,534,610
Number of Sequences: 59808
Number of extensions: 578155
Number of successful extensions: 1427
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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