Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0416
(737 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)... 46 3e-05
At1g45050.1 68414.m05165 ubiquitin-conjugating enzyme 15 (UBC15)... 44 8e-05
At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E... 43 2e-04
At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E... 43 2e-04
At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E... 43 2e-04
At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa ... 43 2e-04
At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa ... 43 2e-04
At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative ... 43 2e-04
At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative ... 43 2e-04
At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E... 42 3e-04
At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative ... 42 3e-04
At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative ... 42 3e-04
At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)... 42 3e-04
At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)... 42 3e-04
At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E... 42 4e-04
At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E... 42 4e-04
At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E... 42 4e-04
At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)... 41 7e-04
At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative ... 41 0.001
At1g75440.1 68414.m08763 ubiquitin-conjugating enzyme 16 (UBC16)... 41 0.001
At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative ... 40 0.002
At3g08700.1 68416.m01011 ubiquitin-conjugating enzyme, putative ... 40 0.002
At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family pro... 40 0.002
At5g42990.1 68418.m05243 ubiquitin-conjugating enzyme 18 (UBC18)... 39 0.003
At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E... 38 0.005
At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)... 38 0.005
At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10) id... 38 0.009
At4g36410.1 68417.m05173 ubiquitin-conjugating enzyme 17 (UBC17)... 36 0.028
At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative ... 34 0.11
At3g20160.1 68416.m02556 geranylgeranyl pyrophosphate synthase, ... 33 0.20
At4g03979.1 68417.m00566 hypothetical protein 31 1.1
At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative ... 30 1.4
At2g18620.1 68415.m02168 geranylgeranyl pyrophosphate synthase, ... 30 1.8
At5g50430.1 68418.m06245 ubiquitin-conjugating enzyme, putative ... 29 2.4
At3g14550.1 68416.m01843 geranylgeranyl pyrophosphate synthase, ... 29 2.4
At3g14510.1 68416.m01837 geranylgeranyl pyrophosphate synthase, ... 29 2.4
At1g49530.1 68414.m05551 geranylgeranyl pyrophosphate synthase (... 29 3.2
At5g32600.1 68418.m03877 hypothetical protein 29 4.3
At4g36810.1 68417.m05221 geranylgeranyl pyrophosphate synthase (... 29 4.3
At3g14530.1 68416.m01841 geranylgeranyl pyrophosphate synthase, ... 29 4.3
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 29 4.3
At2g46030.1 68415.m05726 ubiquitin-conjugating enzyme 6 (UBC6) E... 28 5.6
At2g41960.1 68415.m05191 expressed protein 28 5.6
At2g34100.1 68415.m04175 expressed protein similar to the Asp-r... 28 5.6
At2g04570.1 68415.m00465 GDSL-motif lipase/hydrolase family prot... 28 5.6
At1g75290.1 68414.m08746 isoflavone reductase, putative similar ... 28 5.6
At1g09190.1 68414.m01026 pentatricopeptide (PPR) repeat-containi... 28 5.6
At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related si... 28 7.4
At2g10390.1 68415.m01091 hypothetical protein 28 7.4
At5g20920.2 68418.m02485 eukaryotic translation initiation facto... 27 9.8
At5g20920.1 68418.m02484 eukaryotic translation initiation facto... 27 9.8
At3g16580.1 68416.m02120 F-box family protein contains F-box dom... 27 9.8
>At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)
E2; identical to gi:12643427, SP:P35134
Length = 148
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Frame = +2
Query: 197 QYTTQRPPPAERKGGKRLYFLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICM 364
Q T PP + GG ++ ++I F YPF+PP V +V +P I+ G+IC+
Sbjct: 34 QATIMGPPESPYAGG--VFLVSIHFPPDYPFKPPKVSFKTKVYHPNINS-----NGSICL 86
Query: 365 ELLTKQGWSSAYTVEAVIMQIAATL 439
++L K+ WS A T+ V++ I + L
Sbjct: 87 DIL-KEQWSPALTISKVLLSICSLL 110
>At1g45050.1 68414.m05165 ubiquitin-conjugating enzyme 15 (UBC15)
E2; identical to ubiquitin-conjugating enzyme 15
GI:2801442 from [Arabidopsis thaliana]
Length = 161
Score = 44.4 bits (100), Expect = 8e-05
Identities = 25/69 (36%), Positives = 35/69 (50%)
Frame = +2
Query: 251 YFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIA 430
Y L + F E YP E P V V P S ++ G IC+++L WS A TV +V + I
Sbjct: 63 YQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDIL-YDSWSPAMTVNSVCISIL 121
Query: 431 ATLVKGKAR 457
+ L A+
Sbjct: 122 SMLSSSPAK 130
>At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 149
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Frame = +2
Query: 221 PAERKGGKRLYFLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICMELLTKQGW 388
PAE ++ + I F YPF+PP V +V +P I+ G+IC+++L K+ W
Sbjct: 41 PAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-----NGSICLDIL-KEQW 94
Query: 389 SSAYTVEAVIMQIAATL 439
S A T+ V++ I + L
Sbjct: 95 SPALTISKVLLSICSLL 111
>At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Frame = +2
Query: 221 PAERKGGKRLYFLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICMELLTKQGW 388
PAE ++ + I F YPF+PP V +V +P I+ G+IC+++L K+ W
Sbjct: 40 PAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-----NGSICLDIL-KEQW 93
Query: 389 SSAYTVEAVIMQIAATL 439
S A T+ V++ I + L
Sbjct: 94 SPALTISKVLLSICSLL 110
>At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Frame = +2
Query: 221 PAERKGGKRLYFLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICMELLTKQGW 388
PAE ++ + I F YPF+PP V +V +P I+ G+IC+++L K+ W
Sbjct: 40 PAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-----NGSICLDIL-KEQW 93
Query: 389 SSAYTVEAVIMQIAATL 439
S A T+ V++ I + L
Sbjct: 94 SPALTISKVLLSICSLL 110
>At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 178
Score = 42.7 bits (96), Expect = 2e-04
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +2
Query: 197 QYTTQRPPPAERKGGKRLYFLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICM 364
Q T P + GG ++ + I F YPF+PP V +V +P I+ G+IC+
Sbjct: 64 QATIMGPSDSPYSGG--VFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-----NGSICL 116
Query: 365 ELLTKQGWSSAYTVEAVIMQIAATL 439
++L K+ WS A T+ V++ I + L
Sbjct: 117 DIL-KEQWSPALTISKVLLSICSLL 140
>At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 148
Score = 42.7 bits (96), Expect = 2e-04
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +2
Query: 197 QYTTQRPPPAERKGGKRLYFLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICM 364
Q T P + GG ++ + I F YPF+PP V +V +P I+ G+IC+
Sbjct: 34 QATIMGPSDSPYSGG--VFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-----NGSICL 86
Query: 365 ELLTKQGWSSAYTVEAVIMQIAATL 439
++L K+ WS A T+ V++ I + L
Sbjct: 87 DIL-KEQWSPALTISKVLLSICSLL 110
>At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative
strong similarity to SP|P35133 Ubiquitin-conjugating
enzyme E2-17 kDa 10 (EC 6.3.2.19) (Ubiquitin- protein
ligase 10) (Ubiquitin carrier protein 10) {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 42.7 bits (96), Expect = 2e-04
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +2
Query: 197 QYTTQRPPPAERKGGKRLYFLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICM 364
Q T P + GG ++ +NI F YPF+PP V +V +P I+ G IC+
Sbjct: 34 QATIMGPNESPYSGG--VFLVNIHFPPDYPFKPPKVVFRTKVFHPNINS-----NGNICL 86
Query: 365 ELLTKQGWSSAYTVEAVIMQIAATL 439
++L K WS A T+ V++ I + L
Sbjct: 87 DIL-KDQWSPALTISKVLLSICSLL 110
>At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative
identical or nearly so to Ubiquitin-conjugating enzymes
SP|P35132, SP|P35131, SP|P35133 from {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/81 (32%), Positives = 41/81 (50%)
Frame = +2
Query: 197 QYTTQRPPPAERKGGKRLYFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLT 376
Q T P + GG ++ + I F YPF+PP V + V G+IC+++L
Sbjct: 34 QATIMGPSDSPYSGG--VFLVTIHFPPDYPFKPPKVAFRTKVFHPN-VNSNGSICLDIL- 89
Query: 377 KQGWSSAYTVEAVIMQIAATL 439
K+ WS A T+ V++ I + L
Sbjct: 90 KEQWSPALTISKVLLSICSLL 110
>At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E2;
identical to gi:431261, SP:P42746
Length = 150
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +2
Query: 257 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 436
L + F E YP +PP VR V + + G+IC+++L Q WS Y V AV+ I +
Sbjct: 55 LTLHFTEDYPNKPPIVRFVSRMFHPN-IYADGSICLDILQNQ-WSPIYDVAAVLTSIQSL 112
Query: 437 L 439
L
Sbjct: 113 L 113
>At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 42.3 bits (95), Expect = 3e-04
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +2
Query: 197 QYTTQRPPPAERKGGKRLYFLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICM 364
Q T P + GG ++ + I F YPF+PP V +V +P I+ G+IC+
Sbjct: 34 QATIMGPADSPFAGG--VFLVTIHFPPDYPFKPPKVAFRTKVYHPNINS-----NGSICL 86
Query: 365 ELLTKQGWSSAYTVEAVIMQIAATL 439
++L K+ WS A TV V++ I + L
Sbjct: 87 DIL-KEQWSPALTVSKVLLSICSLL 110
>At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 42.3 bits (95), Expect = 3e-04
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +2
Query: 197 QYTTQRPPPAERKGGKRLYFLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICM 364
Q T P + GG ++ + I F YPF+PP V +V +P I+ G+IC+
Sbjct: 34 QATIMGPADSPFAGG--VFLVTIHFPPDYPFKPPKVAFRTKVYHPNINS-----NGSICL 86
Query: 365 ELLTKQGWSSAYTVEAVIMQIAATL 439
++L K+ WS A TV V++ I + L
Sbjct: 87 DIL-KEQWSPALTVSKVLLSICSLL 110
>At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 42.3 bits (95), Expect = 3e-04
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +2
Query: 197 QYTTQRPPPAERKGGKRLYFLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICM 364
Q T P + GG ++ + I F YPF+PP V +V +P I+ G+IC+
Sbjct: 34 QATIMGPSESPYAGG--VFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-----NGSICL 86
Query: 365 ELLTKQGWSSAYTVEAVIMQIAATL 439
++L K+ WS A T+ V++ I + L
Sbjct: 87 DIL-KEQWSPALTISKVLLSICSLL 110
>At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 42.3 bits (95), Expect = 3e-04
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +2
Query: 197 QYTTQRPPPAERKGGKRLYFLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICM 364
Q T P + GG ++ + I F YPF+PP V +V +P I+ G+IC+
Sbjct: 34 QATIMGPSESPYAGG--VFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-----NGSICL 86
Query: 365 ELLTKQGWSSAYTVEAVIMQIAATL 439
++L K+ WS A T+ V++ I + L
Sbjct: 87 DIL-KEQWSPALTISKVLLSICSLL 110
>At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E2;
identical to gi:2689242, SP:P42745
Length = 152
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +2
Query: 257 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 436
L++ F E YP +PP VR V + + G+IC+++L Q WS Y V A++ I +
Sbjct: 55 LSLQFSEDYPNKPPTVRFVSRMFHPN-IYADGSICLDILQNQ-WSPIYDVAAILTSIQSL 112
Query: 437 L 439
L
Sbjct: 113 L 113
>At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +2
Query: 257 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 436
L++ F E YP +PP VR V + + G+IC+++L Q WS Y V A++ I +
Sbjct: 55 LSLQFSEDYPNKPPTVRFVSRMFHPN-IYADGSICLDILQNQ-WSPIYDVAAILTSIQSL 112
Query: 437 L 439
L
Sbjct: 113 L 113
>At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +2
Query: 257 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 436
L++ F E YP +PP VR V + + G+IC+++L Q WS Y V A++ I +
Sbjct: 55 LSLQFSEDYPNKPPTVRFVSRMFHPN-IYADGSICLDILQNQ-WSPIYDVAAILTSIQSL 112
Query: 437 L 439
L
Sbjct: 113 L 113
>At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)
nearly identical to ubiquitin-conjugating enzyme UBC20
[Arabidopsis thaliana] GI:22530867; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 180
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/63 (36%), Positives = 35/63 (55%)
Frame = +2
Query: 251 YFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIA 430
Y L++ F YPF+PP V+ V V G IC+++L + WSSAY V +++ I
Sbjct: 84 YRLSLSFSNDYPFKPPKVKFETCCFHPN-VDVYGNICLDIL-QDKWSSAYDVRTILLSIQ 141
Query: 431 ATL 439
+ L
Sbjct: 142 SLL 144
>At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative
similar to SP|O60015 Ubiquitin-conjugating enzyme E2-21
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) {Pichia angusta}; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 157
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = +2
Query: 221 PAERKGGKRLYFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAY 400
P+E ++ L E YP +PP VR + I G IC+++L K WS A+
Sbjct: 44 PSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-KNAWSPAW 102
Query: 401 TVEAVIMQIAATL 439
T+++V I A +
Sbjct: 103 TLQSVCRAIIALM 115
>At1g75440.1 68414.m08763 ubiquitin-conjugating enzyme 16 (UBC16)
E2; identical to gi:2801444, GB:AAC39325 from
[Arabidopsis thaliana] (Plant Mol. Biol. 23 (2), 387-396
(1993))
Length = 161
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +2
Query: 251 YFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIA 430
Y L + F E YP E P V ++P ++ G IC+++L WS A TV ++ + I
Sbjct: 63 YQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDIL-YDSWSPAMTVSSICISIL 121
Query: 431 ATL 439
+ L
Sbjct: 122 SML 124
>At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin conjugating enzyme
[Lycopersicon esculentum] GI:886679; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 192
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +2
Query: 257 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 436
++I + YPFEPP ++ + GAIC+++L K WS A T++ ++ I A
Sbjct: 54 IDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDIL-KDQWSPALTLKTALVSIQAL 112
Query: 437 L 439
L
Sbjct: 113 L 113
>At3g08700.1 68416.m01011 ubiquitin-conjugating enzyme, putative
strong similar to ubiquitin-conjugating enzymes E2-17
from [Arabidopsis thaliana] SP|P35134, SP|P35132,
SP|P35133; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 149
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = +2
Query: 197 QYTTQRPPPAERKGGKRLYFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLT 376
Q T P + GG ++ ++I F YPF+PP V + + G+IC+++L
Sbjct: 35 QATIMGPHDSPYSGG--VFTVSIDFSSDYPFKPPKVNFKTKVYHPN-IDSKGSICLDIL- 90
Query: 377 KQGWSSAYTVEAVIMQIAATL 439
K+ WS A T V++ I + L
Sbjct: 91 KEQWSPAPTTSKVLLSICSLL 111
>At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family
protein similar to Ubiquitin-conjugating enzyme E2-16
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) from {Schizosaccharomyces pombe}
SP|P46595, {Caenorhabditis elegans} SP|P35129; contains
Pfam profile PF00179: Ubiquitin-conjugating enzyme
Length = 154
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/77 (35%), Positives = 38/77 (49%)
Frame = +2
Query: 215 PPPAERKGGKRLYFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSS 394
P +GG ++ L+I F YPF+PP PI + G+ICM +L K W+
Sbjct: 46 PDGTPYEGG--MFNLSIKFPTDYPFKPPKFTFKTPIYHPN-INDEGSICMNIL-KDKWTP 101
Query: 395 AYTVEAVIMQIAATLVK 445
A VE V++ I L K
Sbjct: 102 ALMVEKVLLSILLLLEK 118
>At5g42990.1 68418.m05243 ubiquitin-conjugating enzyme 18 (UBC18)
E2; identical to gi:2801448
Length = 161
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +2
Query: 251 YFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIA 430
Y L + F + YP E P V V P ++ G IC+++L WS A TV +V + I
Sbjct: 63 YNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDIL-YDSWSPAMTVSSVCISIL 121
Query: 431 ATL 439
+ L
Sbjct: 122 SML 124
>At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 145
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +2
Query: 221 PAERKGGKRLYFLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICMELLTKQGW 388
PAE ++ + I F YPF+PP V +V +P I+ G+IC+++L K+ W
Sbjct: 40 PAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-----NGSICLDIL-KEQW 93
Query: 389 SSAYTVEAVIM 421
S A T+ V +
Sbjct: 94 SPALTISKVTL 104
>At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)
nearly identical to ubiquitin-conjugating enzyme UBC19
[Arabidopsis thaliana] GI:22530865; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 181
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +2
Query: 251 YFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIA 430
Y L++ F YPF+ P V+ L G IC+++L + WSSAY V +++ I
Sbjct: 85 YRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGN-ICLDILQDK-WSSAYDVRTILLSIQ 142
Query: 431 ATL 439
+ L
Sbjct: 143 SLL 145
>At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10)
identical to ubiquitin-conjugating enzyme COP10
[Arabidopsis thaliana] GI:20065779; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 182
Score = 37.5 bits (83), Expect = 0.009
Identities = 25/77 (32%), Positives = 39/77 (50%)
Frame = +2
Query: 215 PPPAERKGGKRLYFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSS 394
P +GG ++FL+IIF YPF+PP + V I V G + + +L + WS
Sbjct: 75 PSGTPYEGG--IFFLDIIFPSDYPFKPPKL-VFKTRIYHCNVDTAGDLSVNIL-RDSWSP 130
Query: 395 AYTVEAVIMQIAATLVK 445
A T+ V+ I + +K
Sbjct: 131 ALTITKVLQAIRSIFLK 147
>At4g36410.1 68417.m05173 ubiquitin-conjugating enzyme 17 (UBC17)
E2; identical to gi:2801446
Length = 161
Score = 35.9 bits (79), Expect = 0.028
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 251 YFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIA 430
Y L + F E YP E P V +P ++ G IC+++L WS A + ++ + I
Sbjct: 63 YQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVL-YDSWSPAMRLSSICLSIL 121
Query: 431 ATL 439
+ L
Sbjct: 122 SML 124
>At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative
similar to Ubiquitin-conjugating enzyme E2
(Ubiquitin-protein ligase) (Ubiquitin carrier protein)
from {Xenopus laevis} SP|P51669, {Schizosaccharomyces
pombe} SP|P46595, {Caenorhabditis elegans} SP|P35129;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 409
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +2
Query: 248 LYFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLT---KQGWSSAYTVEAVI 418
++ L I E YPF+PP V PI + G IC+++L K W + + V+
Sbjct: 63 IFNLKIQIPERYPFQPPIVSFATPIYHPN-IDNSGRICLDILNLPPKGAWQPSLNISTVL 121
Query: 419 MQIAATL 439
+ L
Sbjct: 122 TSMRLLL 128
>At3g20160.1 68416.m02556 geranylgeranyl pyrophosphate synthase,
putative / GGPP synthetase, putative /
farnesyltranstransferase, putative similar to
gi:2578821; similar to geranyl geranyl pyrophosphate
synthase GB:BAA23157 [Arabidopsis thaliana]
Length = 344
Score = 33.1 bits (72), Expect = 0.20
Identities = 31/94 (32%), Positives = 41/94 (43%)
Frame = -3
Query: 621 NKSLHSAPQFQLPILFRRCEPAIFLMYLNKTFEALLCTARLY*VCETTLVALNWIRALPF 442
NK+L A + P L R L+ K +LC A CE LV A+
Sbjct: 62 NKALEEAVPLREPELKIREAMRYTLLSDGKRVRPMLCLA----ACE--LVGGQESTAM-- 113
Query: 441 TRVAAICMITASTVYADDQPCFVNSSIHIAPPTN 340
+ AI M+ AS++ DD PC N S+ PTN
Sbjct: 114 SAACAIEMLHASSLILDDLPCMDNDSLRRGKPTN 147
>At4g03979.1 68417.m00566 hypothetical protein
Length = 261
Score = 30.7 bits (66), Expect = 1.1
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Frame = -3
Query: 633 YVGRNKSLHSAPQ-FQLPILFR-RCEPA-IFLMYLNKTFEALLCTARLY*VCETTLVAL- 466
++ + SLHS + + I FR RC+ I +Y+ + AL+ + V E + AL
Sbjct: 22 FIFKQYSLHSFHKVYVTSITFRLRCQQRKIARLYIPEPILALIVSH----VSEEGIEALK 77
Query: 465 NWIRALPFTRVAAICMITASTVYADDQPCFVNSS 364
NWI++ + AA + T S V D P F+N S
Sbjct: 78 NWIKSGHEGKSAAFSVETLSRVRLDKSPDFINMS 111
>At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme 6 from [Homo
sapiens] GI:14029267, [Mus musculus] GI:14029263;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 237
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Frame = +2
Query: 251 YFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMEL--LTKQGWSSAYTVEAVIMQ 424
Y+ I F YP++PP + + P G + IC+ + + W+ ++V +++
Sbjct: 54 YYGKIKFPPEYPYKPPGITMTTP---NGRFMTQKKICLSMSDFHPESWNPMWSVSSILTG 110
Query: 425 IAATLVKGKARIQFSATKVVSQTQYSLAVHSRASNVLFRYMRKMAGSHLRK 577
+ + ++ T V+ + + LA S A N RK+ ++ K
Sbjct: 111 LLSFMMDTSPTTGSVNTTVIEKQR--LAKSSLAFNCKTPAFRKLFPEYVEK 159
>At2g18620.1 68415.m02168 geranylgeranyl pyrophosphate synthase,
putative / GGPP synthetase, putative /
farnesyltranstransferase, putative similar to gi:413730
to geranylgeranyl pyrophosphate synthase, chloroplast
precursor GB:P34802 from [Arabidopsis thaliana]
synonymous with farnesyltranstransferase
Length = 347
Score = 29.9 bits (64), Expect = 1.8
Identities = 32/106 (30%), Positives = 42/106 (39%)
Frame = -3
Query: 657 YHSY*HGSYVGRNKSLHSAPQFQLPILFRRCEPAIFLMYLNKTFEALLCTARLY*VCETT 478
+ SY G N++L SA + PI L+ K +LC A CE
Sbjct: 55 FTSYMIGKANAVNEALDSAVSLREPIKIHEAI-RYSLLARGKRVRPVLCIA----ACE-- 107
Query: 477 LVALNWIRALPFTRVAAICMITASTVYADDQPCFVNSSIHIAPPTN 340
LV ALP A+ MI ++ DD PC N + PTN
Sbjct: 108 LVGGEESVALP--AACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTN 151
>At5g50430.1 68418.m06245 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme 6 from [Homo
sapiens] GI:14029267, [Mus musculus] GI:14029263;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 243
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Frame = +2
Query: 251 YFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMEL--LTKQGWSSAYTVEAVIMQ 424
Y+ I F YP++PP + + P G + IC+ + + W+ ++V +++
Sbjct: 54 YYGKIKFPPEYPYKPPGITMTTP---NGRFVTQKKICLSMSDFHPESWNPMWSVSSILTG 110
Query: 425 IAATLVKGKARIQFSATKVVSQTQYSLAVHSRASNVLFRYMRKMAGSHLRK 577
+ + ++ T V + + LA S A N RK+ ++ K
Sbjct: 111 LLSFMMDNSPTTGSVNTSVAEKQR--LAKSSLAFNCKSVTFRKLFPEYVEK 159
>At3g14550.1 68416.m01843 geranylgeranyl pyrophosphate synthase,
putative / GGPP synthetase, putative /
farnesyltranstransferase, putative similar to SP|Q43133
Geranylgeranyl pyrophosphate synthetase, chloroplast
precursor (GGPP synthetase) (GGPS) [Includes:
Dimethylallyltransferase (EC 2.5.1.1);
Geranyltranstransferase (EC 2.5.1.10);
Farnesyltranstransferase (EC 2.5.1.29)] {Sinapis alba};
contains Pfam profile PF00348: Polyprenyl synthetase
Length = 360
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/65 (35%), Positives = 30/65 (46%)
Frame = -3
Query: 534 KTFEALLCTARLY*VCETTLVALNWIRALPFTRVAAICMITASTVYADDQPCFVNSSIHI 355
K LLC A VCE LV + A + A+ MI S++ DD PC N+ +
Sbjct: 106 KRVRPLLCIA----VCE--LVGGD--EATAMSAACAVEMIHTSSLIHDDLPCMDNADLRR 157
Query: 354 APPTN 340
PTN
Sbjct: 158 GKPTN 162
>At3g14510.1 68416.m01837 geranylgeranyl pyrophosphate synthase,
putative / GGPP synthetase, putative /
farnesyltranstransferase, putative similar to
gi:9294375; similar to geranylgeranyl pyrophosphate
synthetase GB:P34802 [Arabidopsis thaliana]
Length = 284
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/65 (35%), Positives = 30/65 (46%)
Frame = -3
Query: 534 KTFEALLCTARLY*VCETTLVALNWIRALPFTRVAAICMITASTVYADDQPCFVNSSIHI 355
K LLC A VCE LV + A + A+ MI S++ DD PC N+ +
Sbjct: 30 KRVRPLLCIA----VCE--LVGGD--EATAMSAACAVEMIHTSSLIHDDLPCMDNADLRR 81
Query: 354 APPTN 340
PTN
Sbjct: 82 GKPTN 86
>At1g49530.1 68414.m05551 geranylgeranyl pyrophosphate synthase
(GGPS6) / GGPP synthetase / farnesyltranstransferase
identical to gi:2578821; similar to geranyl geranyl
pyrophosphate synthase GI:2578822 from [Arabidopsis
thaliana]
Length = 336
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -3
Query: 477 LVALNWIRALPFTRVAAIC---MITASTVYADDQPCFVNSSIHIAPPTN 340
LVA + T + A C MI A+++ DD PC + S+ PTN
Sbjct: 88 LVACELVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTN 136
>At5g32600.1 68418.m03877 hypothetical protein
Length = 388
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -2
Query: 172 MFHSYSESFTNSMEYILFLKECERYMSRSSFMSLSVAWRLPDTLPDR*SCLW 17
+ HSY + N+ME + L E E R++F++ A ++ + + C+W
Sbjct: 319 LVHSYDSARRNNMEVVSKLAEAESRAERAAFVNKENAIKMAE---QKLKCMW 367
>At4g36810.1 68417.m05221 geranylgeranyl pyrophosphate synthase
(GGPS1) / GGPP synthetase / farnesyltranstransferase
identical to GI:413730 to geranylgeranyl pyrophosphate
synthase, chloroplast precursor GB:P34802 from
[Arabidopsis thaliana] synonymous with
farnesyltranstransferase
Length = 371
Score = 28.7 bits (61), Expect = 4.3
Identities = 28/94 (29%), Positives = 38/94 (40%)
Frame = -3
Query: 621 NKSLHSAPQFQLPILFRRCEPAIFLMYLNKTFEALLCTARLY*VCETTLVALNWIRALPF 442
NK+L SA + P+ L+ K +LC A CE LV A+P
Sbjct: 88 NKALDSAVPLREPLKIHEAM-RYSLLAGGKRVRPVLCIA----ACE--LVGGEESTAMP- 139
Query: 441 TRVAAICMITASTVYADDQPCFVNSSIHIAPPTN 340
A+ MI ++ DD PC N + PTN
Sbjct: 140 -AACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTN 172
>At3g14530.1 68416.m01841 geranylgeranyl pyrophosphate synthase,
putative / GGPP synthetase, putative /
farnesyltranstransferase, putative similar to SP|P34802
Geranylgeranyl pyrophosphate synthetase, chloroplast
precursor (GGPP synthetase) (GGPS) [Includes:
Dimethylallyltransferase (EC 2.5.1.1);
Geranyltranstransferase (EC 2.5.1.10);
Farnesyltranstransferase (EC 2.5.1.29)] {Arabidopsis
thaliana}; contains Pfam profile PF00348: Polyprenyl
synthetase
Length = 360
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 453 ALPFTRVAAICMITASTVYADDQPCFVNSSIHIAPPTN 340
A + A+ MI S++ DD PC N+ + PTN
Sbjct: 125 ATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTN 162
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 36 SGSVSGSLQATDRLMKELRDIYRSHS 113
SGS SG + ++ K L D Y+SHS
Sbjct: 68 SGSASGKPSVSSQMAKRLDDAYKSHS 93
>At2g46030.1 68415.m05726 ubiquitin-conjugating enzyme 6 (UBC6) E2;
identical to gi|431267, SP:P42750, PIR:S52661; contains
a ubiquitin-conjugating enzymes active site (PDOC00163)
Length = 183
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +2
Query: 203 TTQRPPPAERKGGKRLYFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQ 382
T P + +GG ++ + + E YP++ P V V I GA+C++++ Q
Sbjct: 35 TFHGPTDSLYQGG--VWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVI-NQ 91
Query: 383 GWSSAY 400
WS +
Sbjct: 92 TWSPMF 97
>At2g41960.1 68415.m05191 expressed protein
Length = 1215
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 409 SGDHADSRHPGEGQGSDPVQCHQSCFTDSVQSGRAQQSFKCLVQIHEKNGWFTP 570
+GD D PG D +C C + V++ + K ++ ++NG FTP
Sbjct: 583 NGD-VDLSSPGSPDDQDE-ECLDGCISPRVETHSCDSTDKEIIDHEDENGCFTP 634
>At2g34100.1 68415.m04175 expressed protein similar to the Asp-rich
region of GP|1633572|U52064
Length = 345
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 406 GSGDHADSRHPGEGQGSDPVQCHQSCFTDSVQSGRAQQSFKCLVQIHEK 552
GSGD S++P P+Q C +D V+ Q C+ ++ EK
Sbjct: 59 GSGDEHSSQYPVSEVKERPIQHWYMCLSD-VKEKPLQHWSMCIAEVKEK 106
>At2g04570.1 68415.m00465 GDSL-motif lipase/hydrolase family protein
similar to family II lipase EXL3 (GI:15054386), EXL1
(GI:15054382), EXL2 (GI:15054384) [Arabidopsis
thaliana]; contains Pfam profile PF00657:
Lipase/Acylhydrolase with GDSL-like motif
Length = 350
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +2
Query: 233 KGGKRLYFLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGW 388
K K L N++F P+EP F+R++ S G+ +VG A C + + G+
Sbjct: 257 KLSKELPGSNLVFSN--PYEP-FMRIIKNPSSFGFEVVGAACCATGMFEMGY 305
>At1g75290.1 68414.m08746 isoflavone reductase, putative similar to
SP|P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-)
{Arabidopsis thaliana}; contains Pfam profile PF02716:
Isoflavone reductase
Length = 323
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 417 ITASTVYADDQPCFVNSSIHIAPPTNT 337
I A T+ A D P +N +++I PP NT
Sbjct: 202 IAAYTIKAVDDPRTLNKTLYINPPNNT 228
>At1g09190.1 68414.m01026 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 999
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 246 LFPPFLSAGGGRCVVYCQ--DPQSAV*CSIHIVSRLLIQWNTYYS*KSVNG 100
LF F++ G YC+ D ++A + R ++ WNT S +VNG
Sbjct: 780 LFKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNG 830
>At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related
similar to ubiquitin-conjugating enzyme (GI:3319990)
[Mus musculus]; similar to Baculoviral IAP
repeat-containing protein 6 (Ubiquitin-conjugating
BIR-domain enzyme apollon) (Swiss-Prot:Q9NR09) [Homo
sapiens];
Length = 609
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 248 LYFLNIIFKETYPFEPPFV 304
L+F +I F +TYP PP V
Sbjct: 380 LFFFDIFFPDTYPSTPPIV 398
>At2g10390.1 68415.m01091 hypothetical protein
Length = 194
Score = 27.9 bits (59), Expect = 7.4
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = -3
Query: 621 NKSLHSAPQFQLPILFRRCEPAIFLMYLNKTFEALLCTARLY*VCETTLVAL-NWIRALP 445
+K LHS Q PI +R I +Y+ + AL+ + V E + AL NWI++
Sbjct: 5 SKCLHSITQ---PINTQR---KIARLYIPEPILALIVSH----VSEEGIEALKNWIKSGH 54
Query: 444 FTRVAAICMITASTVYADDQPCFVNSSI 361
+ AA + T S V D P F+N S+
Sbjct: 55 EGKSAAFSVETLSRVRLDKSPDFINMSL 82
>At5g20920.2 68418.m02485 eukaryotic translation initiation factor 2
subunit 2, putative / eIF-2-beta, putative similar to
SP|P41035 Eukaryotic translation initiation factor 2
subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
Pfam profile PF01873: Domain found in IF2B/IF5
Length = 267
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 167 EHQTALCGS*QYTTQRPPPAERKGGKRLYFLNII 268
E+ L G + T RPP R+G K+ F+N +
Sbjct: 130 ENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFM 163
>At5g20920.1 68418.m02484 eukaryotic translation initiation factor 2
subunit 2, putative / eIF-2-beta, putative similar to
SP|P41035 Eukaryotic translation initiation factor 2
subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
Pfam profile PF01873: Domain found in IF2B/IF5
Length = 268
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 167 EHQTALCGS*QYTTQRPPPAERKGGKRLYFLNII 268
E+ L G + T RPP R+G K+ F+N +
Sbjct: 131 ENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFM 164
>At3g16580.1 68416.m02120 F-box family protein contains F-box domain
Pfam:PF00646
Length = 382
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 322 YRINNTHKRRLEWISFLE 269
Y+INN R +EWI F+E
Sbjct: 279 YKINNNLDRDVEWIKFME 296
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,540,101
Number of Sequences: 28952
Number of extensions: 396095
Number of successful extensions: 966
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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