Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0414
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 126 2e-30
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 97 2e-21
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 93 4e-20
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 85 6e-18
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 77 3e-15
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 63 3e-11
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 62 8e-11
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 61 1e-10
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 61 1e-10
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 61 1e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 58 1e-09
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 54 2e-08
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 53 4e-08
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 51 1e-07
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 51 1e-07
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 47 2e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 46 5e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 46 5e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 42 6e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 42 7e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 40 4e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 39 7e-04
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 37 0.002
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 30 0.24
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 28 1.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.2
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 26 5.2
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 25 6.8
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 9.0
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 126 bits (305), Expect = 2e-30
Identities = 60/85 (70%), Positives = 67/85 (78%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A QIQQ FG +S +RNTCV+GG P+ Q RDL RGVEI IATPGRL+D L+ TNL
Sbjct: 208 AVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNL 267
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRK 256
+R TYLVLDEADRMLDMGFEPQIRK
Sbjct: 268 RRVTYLVLDEADRMLDMGFEPQIRK 292
Score = 99.5 bits (237), Expect = 3e-22
Identities = 42/74 (56%), Positives = 60/74 (81%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE 429
+KI++QIRPDRQT+M+SATWPKEV++LA DYL DYIQ+ +GSL L+A+HNI QIV++
Sbjct: 291 RKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDN 350
Query: 430 HEKENKLNVLLQEI 471
+K +L ++E+
Sbjct: 351 ADKRARLGKDIEEV 364
Score = 51.2 bits (117), Expect = 1e-07
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
F TKR A++I+R +R+ GWPA+ +HGDK Q ERD VL
Sbjct: 375 FTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVL 412
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 97.1 bits (231), Expect = 2e-21
Identities = 47/91 (51%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGT--- 172
A QI + F +R C +GGAP ++Q DL+RG EIV+ TPGR+ID L
Sbjct: 504 AVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRV 563
Query: 173 TNLQRCTYLVLDEADRMLDMGFEPQIRKSLS 265
TNL RCTYLVLDEADRM D+GFEPQ+ + ++
Sbjct: 564 TNLHRCTYLVLDEADRMFDLGFEPQVMRIIN 594
Score = 55.2 bits (127), Expect = 7e-09
Identities = 31/91 (34%), Positives = 56/91 (61%)
Frame = +1
Query: 253 KIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEH 432
+II IRPDRQT+++SAT+P+ ++ LA L ++I +G + A+ + QIV++ E
Sbjct: 591 RIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVAS-EVEQIVEVRPEE 649
Query: 433 EKENKLNVLLQEIGQSQEPGAKTIILLKPRE 525
K ++L LL E+ +Q +T++ + +E
Sbjct: 650 SKFSRLLELLGELYNNQ-LDVRTLVFVDRQE 679
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
FV+ + A+ + ++ + G+ + +HG K Q +RD +
Sbjct: 674 FVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTI 711
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 92.7 bits (220), Expect = 4e-20
Identities = 42/82 (51%), Positives = 59/82 (71%)
Frame = +2
Query: 8 QIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQR 187
QI + + F + S+VR V+GGA R Q R +++G +++ ATPGRL+D +++G +L
Sbjct: 270 QIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLAN 329
Query: 188 CTYLVLDEADRMLDMGFEPQIR 253
+LVLDEADRMLDMGFEPQIR
Sbjct: 330 IKFLVLDEADRMLDMGFEPQIR 351
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/65 (38%), Positives = 44/65 (67%)
Frame = +1
Query: 277 DRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 456
+RQTLM+SAT+P++++ LA D+L DY+ +++G + S + NI Q V ++ EK + L
Sbjct: 364 ERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVG-STSENITQKVVHVEDSEKRSYLLD 422
Query: 457 LLQEI 471
+L +
Sbjct: 423 ILHTL 427
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
FVETKR A+ ++ + +PA +HGD+TQ+ER+ L
Sbjct: 436 FVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERAL 473
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 85.4 bits (202), Expect = 6e-18
Identities = 44/88 (50%), Positives = 54/88 (61%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
AQQIQ F R V GG EQ+ + +G IV+ATPGRL+D LE+ L
Sbjct: 338 AQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVL 397
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRKSLS 265
+CTY+V+DEADRMLDMGFE + K LS
Sbjct: 398 SQCTYVVMDEADRMLDMGFEDDVNKILS 425
Score = 40.3 bits (90), Expect = 2e-04
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
FV KR E I++ + GW AV +HG K+Q++R+ +
Sbjct: 522 FVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAI 559
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/62 (29%), Positives = 36/62 (58%)
Frame = +1
Query: 280 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVL 459
RQT+M+SAT P V LA+ YL + + + IG++ + + ++ I + +K ++ +
Sbjct: 450 RQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEI 509
Query: 460 LQ 465
L+
Sbjct: 510 LE 511
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 76.6 bits (180), Expect = 3e-15
Identities = 36/67 (53%), Positives = 46/67 (68%)
Frame = +2
Query: 65 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEP 244
V+GGAPK EQAR + ++I TPGRL+D + G+ + + YLVLDEADRMLD GFE
Sbjct: 270 VYGGAPKSEQAR-AAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQ 328
Query: 245 QIRKSLS 265
IR +S
Sbjct: 329 DIRNIIS 335
Score = 62.5 bits (145), Expect = 5e-11
Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Frame = +1
Query: 280 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE-HEKENKLNV 456
RQT+ +SATWP+ V+ LA +L D ++I IGS +L+A+ NI QIV+I + KE L+
Sbjct: 346 RQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDN 405
Query: 457 LLQEIGQSQEPGAKTIILLKPREKLRTYQGT 549
LL++ S K +I + +++ +GT
Sbjct: 406 LLRKHLSSGGKDDKILIFVLYKKEAARVEGT 436
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 63.3 bits (147), Expect = 3e-11
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Frame = +2
Query: 5 QQIQQVAADFGH---TSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEK-GT 172
QQI VA + + ++ + V GG K+ + + +GV I+I TPGRL D LE
Sbjct: 230 QQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEA 289
Query: 173 TNLQRCTYLVLDEADRMLDMGFEPQIRKSLS 265
++ + ++VLDE DR++DMGFE + K LS
Sbjct: 290 LDVSQVRWVVLDEGDRLMDMGFEETLTKILS 320
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 61.7 bits (143), Expect = 8e-11
Identities = 33/96 (34%), Positives = 47/96 (48%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A Q QV G V+ GG R+ L V IV+ TPGR++D KG +
Sbjct: 125 ALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADF 184
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRKSLSKYAQTDRL 289
CT V+DEAD++L F P I + LS + + ++
Sbjct: 185 SECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQI 220
Score = 29.5 bits (63), Expect = 0.42
Identities = 18/78 (23%), Positives = 37/78 (47%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE 429
++++ +RQ ++SAT+P VK + +L +IN+ + + Q E
Sbjct: 208 EQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEINL--MDELTLRGVTQYYAFVDE 265
Query: 430 HEKENKLNVLLQEIGQSQ 483
+K + LN L ++ +Q
Sbjct: 266 SQKVHCLNTLFSKLQINQ 283
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 61.3 bits (142), Expect = 1e-10
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTT 175
A QI + G + VR+ + GG QA L + +++ TPGRL+D LE KG +
Sbjct: 127 AYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFS 186
Query: 176 NLQRCTYLVLDEADRMLDMGFEPQIRKSL 262
L+ YL++DEADR+LDM F P I K L
Sbjct: 187 -LKNLKYLIMDEADRLLDMDFGPIIDKIL 214
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 61.3 bits (142), Expect = 1e-10
Identities = 31/66 (46%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Frame = +2
Query: 65 VFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGF 238
V GGA +R +A L +GV +++ATPGRL+D L+ KG + LV+DEADR+L++GF
Sbjct: 195 VIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFV-FRNLRSLVIDEADRILEIGF 253
Query: 239 EPQIRK 256
E ++R+
Sbjct: 254 EDEMRQ 259
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 60.9 bits (141), Expect = 1e-10
Identities = 32/83 (38%), Positives = 42/83 (50%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
AQQIQ+V G V GG R+ L+ GV +V+ TPGR+ D +++
Sbjct: 100 AQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPT 159
Query: 182 QRCTYLVLDEADRMLDMGFEPQI 250
VLDEAD ML GF+ QI
Sbjct: 160 DAVQMFVLDEADEMLSRGFKDQI 182
Score = 28.3 bits (60), Expect = 0.97
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
F T+RK + ++ + + MHGD Q +RD ++
Sbjct: 264 FCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLM 301
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 58.0 bits (134), Expect = 1e-09
Identities = 31/87 (35%), Positives = 45/87 (51%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A Q +V DF + +R+ + GG EQ L +IV+ATPGR + + L
Sbjct: 152 ALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLEL 211
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRKSL 262
Y+V DEADR+ +MGF Q+ + L
Sbjct: 212 SSIEYVVFDEADRLFEMGFAAQLTEIL 238
Score = 28.7 bits (61), Expect = 0.73
Identities = 18/73 (24%), Positives = 38/73 (52%)
Frame = +1
Query: 253 KIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEH 432
+I+ + RQTL++SAT P+ + A+ L D + + + ++ + ++ +
Sbjct: 236 EILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRL-DVESKVSADLQSAFFSVKTA 294
Query: 433 EKENKLNVLLQEI 471
E+E L +LQ+I
Sbjct: 295 EREAALLCILQDI 307
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 53.6 bits (123), Expect = 2e-08
Identities = 28/83 (33%), Positives = 40/83 (48%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A QIQ V G V+ GG + L+ G +V TPGR+ D + +
Sbjct: 102 AVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRT 161
Query: 182 QRCTYLVLDEADRMLDMGFEPQI 250
+ L+LDEAD +L+ GF+ QI
Sbjct: 162 RNVKMLILDEADELLNQGFKEQI 184
Score = 31.1 bits (67), Expect = 0.14
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
F ++RK + ++ +R + MHG+ Q+ERD ++
Sbjct: 266 FCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIM 303
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 52.8 bits (121), Expect = 4e-08
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL----EKG 169
A QI + A G +++ + GG Q+ DL + +V+ATPGRL D + E+
Sbjct: 88 AIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEET 147
Query: 170 TTNLQRCTYLVLDEADRMLDMGF 238
L+R +LV+DEADR+L F
Sbjct: 148 IAGLRRIKFLVMDEADRLLSPTF 170
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 51.2 bits (117), Expect = 1e-07
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGT-TN 178
A Q VA + + GG + Q ++L + +IVIATPGR ID +
Sbjct: 343 AMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFT 402
Query: 179 LQRCTYLVLDEADRMLDMGFEPQIRK 256
++ +V+DEADRML+ GF ++ +
Sbjct: 403 VENIEIMVMDEADRMLEDGFADELNE 428
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 51.2 bits (117), Expect = 1e-07
Identities = 41/125 (32%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG-VEIVIATPGRLIDFLEKGTTN 178
A QI + A + + +R + GG K + + RG ++IATPGRL D L+
Sbjct: 125 ALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRIL 184
Query: 179 LQRCT-YLVLDEADRMLDMGFEPQIRKSLSKYAQT-DRL*CGQLLGPKK*RNLLRITWET 352
T +LDEADR++DMGF I T R C P K N+ R T
Sbjct: 185 ESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFRGILGT 244
Query: 353 TFRSI 367
F+ I
Sbjct: 245 DFKLI 249
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 47.2 bits (107), Expect = 2e-06
Identities = 18/43 (41%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Frame = +2
Query: 116 VEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFE 241
++++++TPGRL+D + + +LQ Y+V+DEADR+LD F+
Sbjct: 261 IDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQ 303
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 46.0 bits (104), Expect = 5e-06
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +2
Query: 50 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG--TTNLQRCTYLVLDEADRM 223
+R + GG ++Q R L + +V+ATPGRL + + T N ++ LVLDEADR+
Sbjct: 221 IRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRL 280
Query: 224 LDMGFEPQIRKSL 262
L ++ K L
Sbjct: 281 LQKSHFEELSKLL 293
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 46.0 bits (104), Expect = 5e-06
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +2
Query: 65 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGF 238
+ GG +E+ L R + I++ TPGRL+ +++ + L+LDEADR+LDMGF
Sbjct: 145 IIGGNNYKEEKERLSR-MNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGF 202
Score = 29.5 bits (63), Expect = 0.42
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 232 GI*TTNQKIIEQIRPDRQTLMWSATWPKEVKKLA 333
G TT I+ + RQT+++SAT K VK LA
Sbjct: 201 GFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLA 234
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 42.3 bits (95), Expect = 6e-05
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +2
Query: 119 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKSLSK 268
+IVIATP R + + G L + +LV+DEAD ML G+ + K+LS+
Sbjct: 142 DIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDM-KTLSR 190
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 41.9 bits (94), Expect = 7e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = +2
Query: 107 ERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKSLSKYAQTDR 286
E+ +VI TPGRL + L ++ + L+LDEAD ++DMGF+ ++ +S+ + R
Sbjct: 130 EKNPSVVIGTPGRLNEMLSHISS--KHLEILILDEADTLIDMGFQRTLQSIISQLPKQRR 187
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 39.5 bits (88), Expect = 4e-04
Identities = 25/76 (32%), Positives = 39/76 (51%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A+QI V + G + V+ FG K + + +IVI TPG ++D +++ +
Sbjct: 197 ARQIMDVVTEMGKYTEVKTA--FG--IKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDA 252
Query: 182 QRCTYLVLDEADRMLD 229
+ VLDEAD MLD
Sbjct: 253 RDIKVFVLDEADNMLD 268
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/60 (33%), Positives = 34/60 (56%)
Frame = +2
Query: 86 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKSLS 265
+E+A L ++ I TP RL+ ++ G + ++ + V+DEADR+ + GF Q LS
Sbjct: 157 QEKAPKLREKYDMCIGTPMRLVQAIQTGLS-FEKVEFFVMDEADRLFEPGFIEQTDHILS 215
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 37.1 bits (82), Expect = 0.002
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +2
Query: 2 AQQIQQVAADFG-HTSYVRNTCVFGGAPKR---EQARDLERGVEIVIATPGRLIDFLEKG 169
A QI+ A F + VR +GG + E +D + IV+ATPGRL + +
Sbjct: 132 AFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREK 191
Query: 170 TTNLQRCTYLVLDEADRMLD 229
+ + VLDE D++L+
Sbjct: 192 ILKVNSVKHFVLDECDKLLE 211
Score = 33.5 bits (73), Expect = 0.026
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQER 608
FV++ +A + R +R +P++C+HG Q+ER
Sbjct: 301 FVKSVSRANELDRLLRECNFPSICIHGGLPQEER 334
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 30.3 bits (65), Expect = 0.24
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +2
Query: 98 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE-PQIRKSLSKYA 274
R L++G+E VI TP RL+ ++ + NLQR +++ + M M + P + +++ +
Sbjct: 135 RCLKKGLECVIETPPRLLMNKDEISLNLQRLSHMETILSKLMPSMSLDLPSLEAKIAELS 194
Query: 275 QT 280
++
Sbjct: 195 ES 196
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +1
Query: 247 NQKIIEQIRP---DRQTLMWSATWPKEVKKLAED 339
N K+IE IR +R TL S +P+E K L+ED
Sbjct: 261 NAKMIEGIRKKRSERDTLNVSTEFPEETKDLSED 294
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +3
Query: 471 WTKSRTWCENNNFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLVSV 629
W K R N V ++R + W +C HGDK +RDE V++
Sbjct: 832 WDKERKGTLGGNAVLEIFGQSKLTRTELEHIWN-LCDHGDKGSLDRDEFAVAL 883
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 5.2
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = +2
Query: 23 AADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR-LIDFL---EKGTTNLQRC 190
A FG S + C G KR RD+ G + ++ PG +D L K +L
Sbjct: 215 APKFGDRSCYQLPCNARGLAKRAILRDVREGADGIMVKPGTPYLDILAMASKLADDLPIA 274
Query: 191 TYLVLDE 211
TY V E
Sbjct: 275 TYQVSGE 281
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +1
Query: 421 CQEHEKENKLNVLLQEIGQSQEPGAKTIILLKPREK 528
C++ E + + + +E+ + + KT+ L KPR +
Sbjct: 165 CEQKEWQQSIKSIEEELVEKYQQSWKTLFLKKPRSR 200
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 602 LLSFIAMHANSWPAISPYVP 543
L +FI M +WPAIS VP
Sbjct: 575 LWNFITMLGTAWPAISYTVP 594
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,893
Number of Sequences: 5004
Number of extensions: 57188
Number of successful extensions: 209
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -