Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0414
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       80   2e-17
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.3  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   4.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.5  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   9.9  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   9.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 79.8 bits (188), Expect = 2e-17
 Identities = 39/83 (46%), Positives = 47/83 (56%)
 Frame = +2

Query: 8   QIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQR 187
           QI Q    F   S ++    +GG     Q   L  G  I++ATPGRL+DF+EKG      
Sbjct: 288 QIWQQIVKFSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSS 347

Query: 188 CTYLVLDEADRMLDMGFEPQIRK 256
             +LVLDEADRMLDMGF P I K
Sbjct: 348 VQFLVLDEADRMLDMGFLPSIEK 370



 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 25/84 (29%), Positives = 49/84 (58%)
 Frame = +1

Query: 277 DRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 456
           +RQTLM+SAT+P EV+ LA  +L +Y+ + +G +   A  ++ Q       ++K++ L  
Sbjct: 382 ERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVG-GACSDVEQNFYEVARNKKKDLLKE 440

Query: 457 LLQEIGQSQEPGAKTIILLKPREK 528
           +L+    S   G  T++ ++ ++K
Sbjct: 441 ILERENDSGTLGG-TLVFVEMKKK 463



 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +3

Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
           FVE K+KA+ I+  +    +P   +HGD+ Q++R+E L
Sbjct: 457 FVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEAL 494


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 543 LICSQLFSWFQQNYC-FRTRFLTLSN 469
           L  +++++WFQ  +C FR    T  N
Sbjct: 525 LTLNEIYNWFQNTFCYFRRNAATWKN 550


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 513 ETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 614
           E ++K+    R  R+YG  +     D+T++ER +
Sbjct: 277 EREQKSYKNEREYRKYGETSKERSRDRTERERSK 310


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = -3

Query: 523 LLVSTKLLFSHQVLDFVQFLAIIHLIYFLFHVLDKYLQFEECCDLRKVVMILY*SECSL 347
           L +STK  F  Q+    Q +  ++ +    +  D   Q ++C   ++ V + Y SE ++
Sbjct: 38  LALSTKPPFLVQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQCGKFKEPVAVFYASEIAI 96


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 427 EHEKENKLNVLLQEIG 474
           ++  ENKLN  +++IG
Sbjct: 213 DYNLENKLNYFIEDIG 228


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 304 TWPKEVKKLAEDYLG 348
           T+PKE  K+ + Y G
Sbjct: 101 TYPKEWSKIVQQYAG 115


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 304 TWPKEVKKLAEDYLG 348
           T+PKE  K+ + Y G
Sbjct: 101 TYPKEWSKIVQQYAG 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,004
Number of Sequences: 438
Number of extensions: 4178
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)