Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0414
(630 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 131 4e-31
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 128 2e-30
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 128 2e-30
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 116 2e-26
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 116 2e-26
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 116 2e-26
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 109 1e-24
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 108 3e-24
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 101 5e-22
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 99 3e-21
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 95 3e-20
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 95 3e-20
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 93 2e-19
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 91 6e-19
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 83 1e-16
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 83 2e-16
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 82 3e-16
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 76 2e-14
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 75 3e-14
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 75 3e-14
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 75 5e-14
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 71 6e-13
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 71 8e-13
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 66 1e-11
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 65 3e-11
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 65 3e-11
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 64 1e-10
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 63 2e-10
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 63 2e-10
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 61 5e-10
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 61 5e-10
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 61 7e-10
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 60 2e-09
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 59 2e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 59 2e-09
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 59 3e-09
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 59 3e-09
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 57 1e-08
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 56 3e-08
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 56 3e-08
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 55 4e-08
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 54 6e-08
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 52 3e-07
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 52 4e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 52 4e-07
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 51 6e-07
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 50 1e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 50 1e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 49 2e-06
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 49 2e-06
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 48 5e-06
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 47 9e-06
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 46 2e-05
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 46 2e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 46 3e-05
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 42 3e-04
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 42 3e-04
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 42 3e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 40 0.001
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 33 0.12
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 33 0.12
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 32 0.27
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 31 0.83
At2g28600.1 68415.m03476 expressed protein 30 1.1
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 29 1.9
At4g03070.1 68417.m00415 2-oxoglutarate-dependent dioxygenase (A... 29 1.9
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 28 4.4
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 28 4.4
At1g10210.1 68414.m01151 mitogen-activated protein kinase, putat... 28 5.9
At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containi... 27 7.8
At3g25960.1 68416.m03235 pyruvate kinase, putative similar to py... 27 7.8
At3g04050.1 68416.m00427 pyruvate kinase, putative similar to py... 27 7.8
At2g28315.1 68415.m03441 transporter-related low similarity to S... 27 7.8
At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containi... 27 7.8
At2g18170.1 68415.m02114 mitogen-activated protein kinase, putat... 27 7.8
At1g59580.2 68414.m06701 mitogen-activated protein kinase, putat... 27 7.8
At1g59580.1 68414.m06700 mitogen-activated protein kinase, putat... 27 7.8
At1g15820.1 68414.m01898 chlorophyll A-B binding protein, chloro... 27 7.8
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 131 bits (316), Expect = 4e-31
Identities = 62/95 (65%), Positives = 76/95 (80%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A QIQQ A+ FG +S ++ TC++GG PK Q RDL++GVEIVIATPGRLID +E TNL
Sbjct: 185 AVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNL 244
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRKSLSKYAQTDR 286
+R TYLVLDEADRMLDMGF+PQIRK +S + + DR
Sbjct: 245 RRVTYLVLDEADRMLDMGFDPQIRKIVS-HIRPDR 278
Score = 84.6 bits (200), Expect = 5e-17
Identities = 40/74 (54%), Positives = 54/74 (72%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE 429
+KI+ IRPDRQTL WSATWPKEV++L++ +L + ++ IGS L AN I QIVD+ E
Sbjct: 268 RKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISE 327
Query: 430 HEKENKLNVLLQEI 471
+K NKL LL++I
Sbjct: 328 SQKYNKLVKLLEDI 341
Score = 50.0 bits (114), Expect = 1e-06
Identities = 20/38 (52%), Positives = 29/38 (76%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
F++TK+ + I+R +R GWPA+ +HGDK+Q ERD VL
Sbjct: 350 FLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVL 387
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 128 bits (310), Expect = 2e-30
Identities = 64/89 (71%), Positives = 72/89 (80%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A QIQ+ + FG S VR+TC++GGAPK Q RDL RGVEIVIATPGRLID LE TNL
Sbjct: 251 AVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNL 310
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRKSLSK 268
+R TYLVLDEADRMLDMGFEPQIRK +S+
Sbjct: 311 KRVTYLVLDEADRMLDMGFEPQIRKIVSQ 339
Score = 83.4 bits (197), Expect = 1e-16
Identities = 38/74 (51%), Positives = 53/74 (71%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE 429
+KI+ QIRPDRQTL+WSATWP+EV+ LA +L D + IGS L AN +I Q+++I
Sbjct: 334 RKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPT 393
Query: 430 HEKENKLNVLLQEI 471
EK N+L LL+++
Sbjct: 394 PEKYNRLLTLLKQL 407
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
FVETKR + ++R +R GWPA+ +HGDKTQ ERD VL
Sbjct: 416 FVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVL 453
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 128 bits (310), Expect = 2e-30
Identities = 64/89 (71%), Positives = 72/89 (80%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A QIQ+ + FG S VR+TC++GGAPK Q RDL RGVEIVIATPGRLID LE TNL
Sbjct: 251 AVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNL 310
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRKSLSK 268
+R TYLVLDEADRMLDMGFEPQIRK +S+
Sbjct: 311 KRVTYLVLDEADRMLDMGFEPQIRKIVSQ 339
Score = 83.4 bits (197), Expect = 1e-16
Identities = 38/74 (51%), Positives = 53/74 (71%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE 429
+KI+ QIRPDRQTL+WSATWP+EV+ LA +L D + IGS L AN +I Q+++I
Sbjct: 334 RKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPT 393
Query: 430 HEKENKLNVLLQEI 471
EK N+L LL+++
Sbjct: 394 PEKYNRLLTLLKQL 407
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
FVETKR + ++R +R GWPA+ +HGDKTQ ERD VL
Sbjct: 416 FVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVL 453
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 116 bits (278), Expect = 2e-26
Identities = 55/85 (64%), Positives = 66/85 (77%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+ATPGRL D LE +L
Sbjct: 243 ATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISL 302
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRK 256
++ +YLVLDEADRMLDMGFEPQIRK
Sbjct: 303 RQISYLVLDEADRMLDMGFEPQIRK 327
Score = 74.9 bits (176), Expect = 4e-14
Identities = 39/87 (44%), Positives = 62/87 (71%), Gaps = 1/87 (1%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHNILQIVDICQ 426
+KI+++I RQTLM++ATWPK V+K+A D L + Q+NIG++ +L AN +I Q +++
Sbjct: 326 RKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVA 385
Query: 427 EHEKENKLNVLLQEIGQSQEPGAKTII 507
EK+ + L++I +SQEPG+K II
Sbjct: 386 PMEKQRR----LEQILRSQEPGSKVII 408
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
F TKR + ++RN+ R + A +HGDK+Q ERD VL
Sbjct: 409 FCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVL 445
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 116 bits (278), Expect = 2e-26
Identities = 55/85 (64%), Positives = 66/85 (77%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+ATPGRL D LE +L
Sbjct: 243 ATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISL 302
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRK 256
++ +YLVLDEADRMLDMGFEPQIRK
Sbjct: 303 RQISYLVLDEADRMLDMGFEPQIRK 327
Score = 74.9 bits (176), Expect = 4e-14
Identities = 39/87 (44%), Positives = 62/87 (71%), Gaps = 1/87 (1%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHNILQIVDICQ 426
+KI+++I RQTLM++ATWPK V+K+A D L + Q+NIG++ +L AN +I Q +++
Sbjct: 326 RKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVA 385
Query: 427 EHEKENKLNVLLQEIGQSQEPGAKTII 507
EK+ + L++I +SQEPG+K II
Sbjct: 386 PMEKQRR----LEQILRSQEPGSKVII 408
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
F TKR + ++RN+ R + A +HGDK+Q ERD VL
Sbjct: 409 FCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVL 445
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 116 bits (278), Expect = 2e-26
Identities = 55/85 (64%), Positives = 66/85 (77%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+ATPGRL D LE +L
Sbjct: 243 ATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISL 302
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRK 256
++ +YLVLDEADRMLDMGFEPQIRK
Sbjct: 303 RQISYLVLDEADRMLDMGFEPQIRK 327
Score = 74.9 bits (176), Expect = 4e-14
Identities = 39/87 (44%), Positives = 62/87 (71%), Gaps = 1/87 (1%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHNILQIVDICQ 426
+KI+++I RQTLM++ATWPK V+K+A D L + Q+NIG++ +L AN +I Q +++
Sbjct: 326 RKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVA 385
Query: 427 EHEKENKLNVLLQEIGQSQEPGAKTII 507
EK+ + L++I +SQEPG+K II
Sbjct: 386 PMEKQRR----LEQILRSQEPGSKVII 408
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
F TKR + ++RN+ R + A +HGDK+Q ERD VL
Sbjct: 409 FCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVL 445
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 109 bits (262), Expect = 1e-24
Identities = 52/89 (58%), Positives = 67/89 (75%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A QIQ A FG +S + C++GGAPK Q +++ERGV+IV+ATPGRL D LE +L
Sbjct: 314 ATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISL 373
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRKSLSK 268
+ +YLVLDEADRMLDMGFEPQIRK +++
Sbjct: 374 HQVSYLVLDEADRMLDMGFEPQIRKIVNE 402
Score = 77.0 bits (181), Expect = 1e-14
Identities = 39/87 (44%), Positives = 62/87 (71%), Gaps = 1/87 (1%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHNILQIVDICQ 426
+KI+ ++ RQTLM++ATWPKEV+K+A D L + Q+NIG++ +L AN +I Q +++
Sbjct: 397 RKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLA 456
Query: 427 EHEKENKLNVLLQEIGQSQEPGAKTII 507
EK ++ L++I +SQEPG+K II
Sbjct: 457 PMEKHSR----LEQILRSQEPGSKIII 479
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
F TKR + ++RN+ R + A +HGDK+Q ERD+VL
Sbjct: 480 FCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVL 516
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 108 bits (260), Expect = 3e-24
Identities = 52/89 (58%), Positives = 66/89 (74%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A QIQ A FG +S + TC++GGAPK Q ++LERG +IV+ATPGRL D LE +
Sbjct: 520 ATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDF 579
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRKSLSK 268
Q+ + LVLDEADRMLDMGFEPQIRK +++
Sbjct: 580 QQVSLLVLDEADRMLDMGFEPQIRKIVNE 608
Score = 81.4 bits (192), Expect = 5e-16
Identities = 42/87 (48%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHNILQIVDICQ 426
+KI+ +I P RQTLM++ATWPKEV+K+A D L + +Q+NIG + +L+AN I Q V++
Sbjct: 603 RKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVP 662
Query: 427 EHEKENKLNVLLQEIGQSQEPGAKTII 507
+ EKE + L++I +SQE G+K II
Sbjct: 663 QMEKERR----LEQILRSQERGSKVII 685
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/38 (50%), Positives = 28/38 (73%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
F TKR ++++R++ R+ + AV +HGDKTQ ERD VL
Sbjct: 686 FCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVL 722
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 101 bits (241), Expect = 5e-22
Identities = 48/85 (56%), Positives = 60/85 (70%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A QI A F + + V+ +GG P +Q R+LERGV+I++ATPGRL D LE+G +L
Sbjct: 237 ACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSL 296
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRK 256
Q +L LDEADRMLDMGFEPQIRK
Sbjct: 297 QMVRFLALDEADRMLDMGFEPQIRK 321
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/78 (32%), Positives = 49/78 (62%)
Frame = +1
Query: 280 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVL 459
RQT+++SAT+P+E+++LA D+L +YI + +G + S+ I+Q V+ + +K + L L
Sbjct: 334 RQTMLFSATFPREIQRLASDFLSNYIFLAVGRVG-SSTDLIVQRVEFVHDSDKRSHLMDL 392
Query: 460 LQEIGQSQEPGAKTIILL 513
L ++ G + + L+
Sbjct: 393 LHAQRENGNQGKQALTLV 410
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLVS 626
FVETK+ A+++ + G+PA +HGD++QQER+ L S
Sbjct: 411 FVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRS 450
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 98.7 bits (235), Expect = 3e-21
Identities = 46/85 (54%), Positives = 59/85 (69%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A QI A F + + V+ +GG P +Q R+LERGV+I++ATPGRL D LE+ ++
Sbjct: 250 ASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSM 309
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRK 256
Q +L LDEADRMLDMGFEPQIRK
Sbjct: 310 QMIRFLALDEADRMLDMGFEPQIRK 334
Score = 51.2 bits (117), Expect = 6e-07
Identities = 31/92 (33%), Positives = 57/92 (61%), Gaps = 4/92 (4%)
Frame = +1
Query: 250 QKIIEQI----RPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVD 417
+KI+EQ+ R RQTL++SAT+P+E+++LA D+L +YI + +G + S+ I+Q V+
Sbjct: 333 RKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVG-SSTDLIVQRVE 391
Query: 418 ICQEHEKENKLNVLLQEIGQSQEPGAKTIILL 513
+ +K + L LL ++ G + + L+
Sbjct: 392 FVLDSDKRSHLMDLLHAQRENGIQGKQALTLV 423
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
FVETKR A+++ + G+PA +HGD+TQQER+ L
Sbjct: 424 FVETKRGADSLENWLCINGFPATSIHGDRTQQEREVAL 461
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 95.5 bits (227), Expect = 3e-20
Identities = 45/85 (52%), Positives = 58/85 (68%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A QI A F + + V+ +GG P +Q R+LERG +I++ATPGRL D LE+ ++
Sbjct: 242 ACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSM 301
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRK 256
Q +L LDEADRMLDMGFEPQIRK
Sbjct: 302 QMIRFLALDEADRMLDMGFEPQIRK 326
Score = 55.2 bits (127), Expect = 3e-08
Identities = 31/102 (30%), Positives = 62/102 (60%), Gaps = 4/102 (3%)
Frame = +1
Query: 250 QKIIEQI----RPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVD 417
+KI+EQ+ R RQT+++SAT+P ++++LA D++ +YI + +G + S+ I Q V+
Sbjct: 325 RKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVE 383
Query: 418 ICQEHEKENKLNVLLQEIGQSQEPGAKTIILLKPREKLRTYQ 543
QE +K + L LL ++Q+ + T++ ++ + T +
Sbjct: 384 FVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLE 425
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLVS 626
FVETKR A+ + + +PA +HGD+TQQER+ L S
Sbjct: 414 FVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRS 453
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 95.5 bits (227), Expect = 3e-20
Identities = 45/85 (52%), Positives = 58/85 (68%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A QI A F + + V+ +GG P +Q R+LERG +I++ATPGRL D LE+ ++
Sbjct: 242 ACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSM 301
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRK 256
Q +L LDEADRMLDMGFEPQIRK
Sbjct: 302 QMIRFLALDEADRMLDMGFEPQIRK 326
Score = 55.2 bits (127), Expect = 3e-08
Identities = 31/102 (30%), Positives = 62/102 (60%), Gaps = 4/102 (3%)
Frame = +1
Query: 250 QKIIEQI----RPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVD 417
+KI+EQ+ R RQT+++SAT+P ++++LA D++ +YI + +G + S+ I Q V+
Sbjct: 325 RKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVE 383
Query: 418 ICQEHEKENKLNVLLQEIGQSQEPGAKTIILLKPREKLRTYQ 543
QE +K + L LL ++Q+ + T++ ++ + T +
Sbjct: 384 FVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLE 425
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLVS 626
FVETKR A+ + + +PA +HGD+TQQER+ L S
Sbjct: 414 FVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRS 453
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 92.7 bits (220), Expect = 2e-19
Identities = 45/83 (54%), Positives = 55/83 (66%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
AQQI++ F H R T + GG EQ + +G EIVIATPGRLID LE+ L
Sbjct: 402 AQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVL 461
Query: 182 QRCTYLVLDEADRMLDMGFEPQI 250
+C Y+VLDEADRM+DMGFEPQ+
Sbjct: 462 NQCNYVVLDEADRMIDMGFEPQV 484
Score = 36.3 bits (80), Expect = 0.017
Identities = 12/35 (34%), Positives = 25/35 (71%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERD 611
FV TK+ ++I++N+ + G+ +HG K+Q++R+
Sbjct: 582 FVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQRE 616
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 91.1 bits (216), Expect = 6e-19
Identities = 44/84 (52%), Positives = 56/84 (66%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A QI A F +R + V+GG K EQ ++L+ G EIV+ATPGRLID L+ +
Sbjct: 314 AHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTM 373
Query: 182 QRCTYLVLDEADRMLDMGFEPQIR 253
R +YLVLDEADRM D+GFEPQ+R
Sbjct: 374 MRASYLVLDEADRMFDLGFEPQVR 397
Score = 58.8 bits (136), Expect = 3e-09
Identities = 31/74 (41%), Positives = 51/74 (68%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE 429
+ I+ QIRPDRQTL++SAT P +V+KLA + L D I++ +G + + AN +I Q+V++
Sbjct: 397 RSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGM-ANEDITQVVNVIPS 455
Query: 430 HEKENKLNVLLQEI 471
+ KL LL+++
Sbjct: 456 DAE--KLPWLLEKL 467
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 83.4 bits (197), Expect = 1e-16
Identities = 43/87 (49%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Frame = +2
Query: 5 QQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGT---T 175
QQI F +R V+GG+ +Q +L+RG EIV+ TPGR+ID L + T
Sbjct: 616 QQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKIT 675
Query: 176 NLQRCTYLVLDEADRMLDMGFEPQIRK 256
NL+R T+LV+DEADRM DMGFEPQI +
Sbjct: 676 NLRRVTFLVMDEADRMFDMGFEPQITR 702
Score = 58.4 bits (135), Expect = 4e-09
Identities = 35/119 (29%), Positives = 69/119 (57%)
Frame = +1
Query: 253 KIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEH 432
+II+ IRP+RQT+++SAT+P++V+ LA L ++I +G + N +I Q+V++ E
Sbjct: 702 RIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPES 760
Query: 433 EKENKLNVLLQEIGQSQEPGAKTIILLKPREKLRTYQGT*GDMAGQLFACMAIKLNKKE 609
++ + LL+ +G+ E G K ++ ++ +EK DM + C+++ K +
Sbjct: 761 DRFLR---LLELLGEWSEKG-KILVFVQSQEKCDALY---RDMIKSSYPCLSLHGGKDQ 812
Score = 30.7 bits (66), Expect = 0.83
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
FV+++ K + + R++ + +P + +HG K Q +R+ +
Sbjct: 782 FVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTI 819
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 82.6 bits (195), Expect = 2e-16
Identities = 41/88 (46%), Positives = 54/88 (61%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A QI V + G +++ CV+GG+ K Q + GV+IVI TPGRL D +E L
Sbjct: 204 AVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRL 263
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRKSLS 265
+++VLDEADRMLDMGFE +R LS
Sbjct: 264 SDVSFVVLDEADRMLDMGFEEPVRFILS 291
Score = 66.5 bits (155), Expect = 1e-11
Identities = 31/88 (35%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 IIEQIRPDRQTLMWSATWPKEVKKLAEDYLG-DYIQINIGSLQLSANHNILQIVDICQEH 432
I+ RQ +M+SATWP +V KLA++++ + I++ IGS+ L+ANH+++QI+++ E
Sbjct: 289 ILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDER 348
Query: 433 EKENKLNVLLQEIGQSQEPGAKTIILLK 516
++ +L LL++ +SQ+ L K
Sbjct: 349 ARDQRLIALLEKYHKSQKNRVLVFALYK 376
Score = 35.9 bits (79), Expect = 0.022
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
F K +AE + R +++ GW AV +HG+K Q ER L
Sbjct: 372 FALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSL 409
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 81.8 bits (193), Expect = 3e-16
Identities = 43/87 (49%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Frame = +2
Query: 5 QQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGT---T 175
QQI F + V+GG+ +Q +L+RG EIV+ TPGR+ID L + T
Sbjct: 483 QQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKIT 542
Query: 176 NLQRCTYLVLDEADRMLDMGFEPQIRK 256
NL+R TYLV+DEADRM DMGFEPQI +
Sbjct: 543 NLRRVTYLVMDEADRMFDMGFEPQITR 569
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/92 (35%), Positives = 61/92 (66%)
Frame = +1
Query: 253 KIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEH 432
+I++ IRPDRQT+++SAT+P++V+ LA L ++I +G + N +I Q+V+I E
Sbjct: 569 RIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSV-VNKDITQLVEIRPES 627
Query: 433 EKENKLNVLLQEIGQSQEPGAKTIILLKPREK 528
E+ ++ LL+ +G+ E G K ++ ++ +EK
Sbjct: 628 ERFSR---LLELLGEWYEKG-KVLVFVRSQEK 655
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 75.8 bits (178), Expect = 2e-14
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +2
Query: 11 IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQ 184
++Q A Y +R+ GG R Q ++RGV IV+ATPGRL D L K +L
Sbjct: 242 VEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLD 301
Query: 185 RCTYLVLDEADRMLDMGFEPQIRK 256
C YL LDEADR++D+GFE IR+
Sbjct: 302 ACRYLTLDEADRLVDLGFEDDIRE 325
Score = 37.1 bits (82), Expect = 0.010
Identities = 21/80 (26%), Positives = 46/80 (57%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE 429
+++ + + RQTL++SAT P +++ A L + +N+G +AN +++Q V+ ++
Sbjct: 324 REVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQ 382
Query: 430 HEKENKLNVLLQEIGQSQEP 489
E K+ LL+ + ++ P
Sbjct: 383 ---EAKIVYLLECLQKTSPP 399
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 75.4 bits (177), Expect = 3e-14
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +2
Query: 14 QQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRC 190
+QV +F ++ +T C++GG P +Q R L+ GV++ + TPGR+ID +++G NL
Sbjct: 192 RQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEV 251
Query: 191 TYLVLDEADRMLDMGFEPQIRKSLSK 268
++VLDEAD+ML +GF + L K
Sbjct: 252 QFVVLDEADQMLQVGFAEDVEIILEK 277
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 75.4 bits (177), Expect = 3e-14
Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +2
Query: 14 QQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRC 190
+QV +F ++ +T C++GG P +Q R+L G+++ + TPGR+ID +++G NL
Sbjct: 204 RQVEKEFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEV 263
Query: 191 TYLVLDEADRMLDMGFEPQIRKSLSK 268
++VLDEAD+ML +GF + L K
Sbjct: 264 QFVVLDEADQMLQVGFAEDVEIILQK 289
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 74.5 bits (175), Expect = 5e-14
Identities = 36/92 (39%), Positives = 53/92 (57%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
++Q+ +VA H + R+ V GG+ R Q L +++V+ TPGR++ +E+G
Sbjct: 202 SEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVY 261
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRKSLSKYAQ 277
YLVLDEAD M D GF P+IRK L+ Q
Sbjct: 262 GDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQ 293
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 70.9 bits (166), Expect = 6e-13
Identities = 33/72 (45%), Positives = 44/72 (61%)
Frame = +2
Query: 47 YVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML 226
Y+ CV+GG Q L RGV++V+ TPGR+ID +E + L YLVLDEAD+ML
Sbjct: 206 YLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQML 265
Query: 227 DMGFEPQIRKSL 262
+GFE + L
Sbjct: 266 AVGFEEAVESIL 277
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 369
+ I+E + RQ++++SAT P VKKLA YL + + I++
Sbjct: 274 ESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 313
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 70.5 bits (165), Expect = 8e-13
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Frame = +2
Query: 11 IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQ 184
++Q A Y +R+ GG R Q +++GV IV+ATPGRL D L K +L
Sbjct: 193 VEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLD 252
Query: 185 RCTYLVLDEADRMLDMGFEPQIR 253
C L LDEADR++D+GFE IR
Sbjct: 253 ACRLLTLDEADRLVDLGFEDDIR 275
Score = 35.5 bits (78), Expect = 0.029
Identities = 17/61 (27%), Positives = 35/61 (57%)
Frame = +1
Query: 256 IIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHE 435
+ + + RQTL++SAT P +++ A L + +N+G +AN +++Q V+ ++
Sbjct: 277 VFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEA 335
Query: 436 K 438
K
Sbjct: 336 K 336
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERD 611
F E K ++I + G AV +HG K Q++RD
Sbjct: 354 FCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRD 388
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 66.5 bits (155), Expect = 1e-11
Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Frame = +2
Query: 14 QQVAADF---GHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQ 184
+QVAADF G + + + C++GG Q L+RGV+IV+ TPGR+ D +E+ +
Sbjct: 188 KQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFS 247
Query: 185 RCTYLVLDEADRMLDMGFEPQIRKSLSKYAQTDRL 289
+ VLDEAD ML MGF + L K + ++
Sbjct: 248 YLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKV 282
Score = 29.1 bits (62), Expect = 2.5
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +1
Query: 283 QTLMWSATWPKEVKKLAEDYL-GDYIQIN-IGSLQLSANHNILQIVDICQEHEKENKLNV 456
QTL++SAT P VK ++ +L D I+ +G+ ++ A++++ I C +
Sbjct: 283 QTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMAR---- 338
Query: 457 LLQEIGQSQEPGAKTIILLKPREKLRTYQG 546
L+ +I G +TII + + ++ G
Sbjct: 339 LIPDIISCYSSGGQTIIFAETKVQVSELSG 368
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 65.3 bits (152), Expect = 3e-11
Identities = 34/83 (40%), Positives = 45/83 (54%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
AQQI++V G V+ GG RE R L+ GV +V+ TPGR+ D L++ +
Sbjct: 120 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRA 179
Query: 182 QRCTYLVLDEADRMLDMGFEPQI 250
VLDEAD ML GF+ QI
Sbjct: 180 DNIKMFVLDEADEMLSRGFKDQI 202
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 65.3 bits (152), Expect = 3e-11
Identities = 34/83 (40%), Positives = 44/83 (53%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
AQQI++V G V+ GG RE R L+ GV +V+ TPGR+ D L + +
Sbjct: 122 AQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFDLLRRQSLRA 181
Query: 182 QRCTYLVLDEADRMLDMGFEPQI 250
VLDEAD ML GF+ QI
Sbjct: 182 DAIKMFVLDEADEMLSRGFKDQI 204
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 63.7 bits (148), Expect = 1e-10
Identities = 34/83 (40%), Positives = 44/83 (53%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
AQQI++V G V+ GG RE R L+ GV +V+ TPGR+ D L + +
Sbjct: 120 AQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRP 179
Query: 182 QRCTYLVLDEADRMLDMGFEPQI 250
VLDEAD ML GF+ QI
Sbjct: 180 DCIKMFVLDEADEMLSRGFKDQI 202
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/90 (35%), Positives = 45/90 (50%)
Frame = +2
Query: 8 QIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQR 187
Q++ A G + V GG P Q +++GVE++I TPGR++D L K T L
Sbjct: 201 QVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDN 260
Query: 188 CTYLVLDEADRMLDMGFEPQIRKSLSKYAQ 277
VLDE D ML GF Q+ + +Q
Sbjct: 261 IMTFVLDEVDCMLQRGFRDQVMQIFQALSQ 290
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/90 (35%), Positives = 45/90 (50%)
Frame = +2
Query: 8 QIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQR 187
Q++ A G + V GG P Q +++GVE++I TPGR++D L K T L
Sbjct: 64 QVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDN 123
Query: 188 CTYLVLDEADRMLDMGFEPQIRKSLSKYAQ 277
VLDE D ML GF Q+ + +Q
Sbjct: 124 IMTFVLDEVDCMLQRGFRDQVMQIFQALSQ 153
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 61.3 bits (142), Expect = 5e-10
Identities = 28/88 (31%), Positives = 48/88 (54%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A Q QV + G ++ GG ++ L + V +++ TPGR++D +KG L
Sbjct: 212 ALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVL 271
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRKSLS 265
+ C+ LV+DEAD++L F+P + +S
Sbjct: 272 KDCSVLVMDEADKLLSQEFQPSVEHLIS 299
Score = 32.7 bits (71), Expect = 0.21
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE 429
+ +I + RQ LM+SAT+P VK + +L + IN+ +L+ I Q +E
Sbjct: 295 EHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMD-ELTLK-GITQFYAFVEE 352
Query: 430 HEKENKLNVLLQEIGQSQ 483
+K + LN L ++ +Q
Sbjct: 353 RQKIHCLNTLFSKLQINQ 370
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 61.3 bits (142), Expect = 5e-10
Identities = 28/88 (31%), Positives = 48/88 (54%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A Q QV + G ++ GG ++ L + V +++ TPGR++D +KG L
Sbjct: 212 ALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVL 271
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRKSLS 265
+ C+ LV+DEAD++L F+P + +S
Sbjct: 272 KDCSVLVMDEADKLLSQEFQPSVEHLIS 299
Score = 32.7 bits (71), Expect = 0.21
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE 429
+ +I + RQ LM+SAT+P VK + +L + IN+ +L+ I Q +E
Sbjct: 295 EHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMD-ELTLK-GITQFYAFVEE 352
Query: 430 HEKENKLNVLLQEIGQSQ 483
+K + LN L ++ +Q
Sbjct: 353 RQKIHCLNTLFSKLQINQ 370
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 60.9 bits (141), Expect = 7e-10
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Frame = +2
Query: 65 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL-QRCTYLVLDEADRMLDMGFE 241
V GG ++ +A L +GV +++ATPGRL+D LE + + +LV+DEADR+L+ FE
Sbjct: 260 VIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFE 319
Query: 242 PQIRKSLSKYAQT 280
++K L+ +T
Sbjct: 320 EDLKKILNLLPKT 332
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/83 (37%), Positives = 46/83 (55%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
+Q + + A HT+ + C+ GG E + LERGV V TPGR+ D +++G+
Sbjct: 104 SQTEKTIQAIGAHTNIQAHACI-GGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQT 162
Query: 182 QRCTYLVLDEADRMLDMGFEPQI 250
+ LVLDE+D ML G + QI
Sbjct: 163 KAVKLLVLDESDEMLSKGLKDQI 185
Score = 34.3 bits (75), Expect = 0.068
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
F T++K + ++ +R + MHGDK Q+ERD+++
Sbjct: 267 FCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIM 304
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +1
Query: 277 DRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKL 450
D Q + SAT P+E+ ++ E ++ D ++I + +L+ VD+ +E K + L
Sbjct: 195 DIQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTL 252
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/85 (32%), Positives = 45/85 (52%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A Q QV + + GG R+ L + V +++ TPGR++D +KG L
Sbjct: 235 ALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVL 294
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRK 256
+ C LV+DEAD++L + F+P I +
Sbjct: 295 KDCAMLVMDEADKLLSVEFQPSIEE 319
Score = 35.1 bits (77), Expect = 0.039
Identities = 24/78 (30%), Positives = 41/78 (52%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE 429
+++I+ + RQ LM+SAT+P VK + YL IN+ QL+ + Q +E
Sbjct: 318 EELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPYIINLMD-QLTL-MGVTQYYAFVEE 375
Query: 430 HEKENKLNVLLQEIGQSQ 483
+K + LN L ++ +Q
Sbjct: 376 RQKVHCLNTLFSKLQINQ 393
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 59.3 bits (137), Expect = 2e-09
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL-EKGTTN 178
A+Q + + G + +R + + GG +Q +L +G +++IATPGRL+ L E
Sbjct: 111 AEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDDMT 170
Query: 179 LQRCTYLVLDEADRMLDMGFEPQIRKSLSKYAQ 277
L+ Y+V DEAD + MGF Q+ + L++ ++
Sbjct: 171 LRTVEYVVFDEADSLFGMGFAEQLHQILTQLSE 203
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 217 SYVGYGI*TTNQKIIEQIRPDRQTLMWSATWPKEVKKLAE 336
S G G +I+ Q+ +RQTL++SAT P + + A+
Sbjct: 184 SLFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAK 223
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/85 (31%), Positives = 45/85 (52%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A Q QV + ++ GG R+ L + V +++ TPGR++D +KG L
Sbjct: 205 ALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVL 264
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRK 256
+ C LV+DEAD++L F+P + +
Sbjct: 265 KDCAMLVMDEADKLLSAEFQPSLEE 289
Score = 33.1 bits (72), Expect = 0.16
Identities = 23/78 (29%), Positives = 42/78 (53%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE 429
+++I+ + +RQ LM+SAT+P VK + +L IN+ QL+ + Q +E
Sbjct: 288 EELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMD-QLTL-MGVTQYYAFVEE 345
Query: 430 HEKENKLNVLLQEIGQSQ 483
+K + LN L ++ +Q
Sbjct: 346 RQKVHCLNTLFSKLQINQ 363
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/85 (31%), Positives = 45/85 (52%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 181
A Q QV + ++ GG R+ L + V +++ TPGR++D +KG L
Sbjct: 205 ALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVL 264
Query: 182 QRCTYLVLDEADRMLDMGFEPQIRK 256
+ C LV+DEAD++L F+P + +
Sbjct: 265 KDCAMLVMDEADKLLSAEFQPSLEE 289
Score = 33.1 bits (72), Expect = 0.16
Identities = 23/78 (29%), Positives = 42/78 (53%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE 429
+++I+ + +RQ LM+SAT+P VK + +L IN+ QL+ + Q +E
Sbjct: 288 EELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMD-QLTL-MGVTQYYAFVEE 345
Query: 430 HEKENKLNVLLQEIGQSQ 483
+K + LN L ++ +Q
Sbjct: 346 RQKVHCLNTLFSKLQINQ 363
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +2
Query: 2 AQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTN 178
A Q ++ G H + + C+ GG E R LE GV +V TPGR+ D +++ +
Sbjct: 116 ATQTEKTIQAIGLHANIQAHACI-GGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLR 174
Query: 179 LQRCTYLVLDEADRMLDMGFEPQI 250
+ L+LDE+D ML GF+ QI
Sbjct: 175 TRAIKLLILDESDEMLSRGFKDQI 198
Score = 37.9 bits (84), Expect = 0.005
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
F TKRK + +S +R + + MHGD Q+ERD ++
Sbjct: 280 FCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIM 317
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 55.6 bits (128), Expect = 3e-08
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Frame = +2
Query: 8 QIQQVAADFGHT-SYVRNTCVFGGAPKREQARDLER-GVEIVIATPGRLIDFLEK-GTTN 178
QI VA F T + V + + GG + + +E G ++I TPGRL D +E+ +
Sbjct: 105 QIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRLSDIMERMEILD 164
Query: 179 LQRCTYLVLDEADRMLDMGFEPQIRKSLSKYAQTDR 286
+ L+LDEADR+L+MGF+ Q+ +S+ + R
Sbjct: 165 FRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRR 200
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 55.6 bits (128), Expect = 3e-08
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Frame = +2
Query: 8 QIQQVAADFGHT-SYVRNTCVFGGAPKREQARDLER-GVEIVIATPGRLIDFLEKGT-TN 178
QI +VA F T V + + GG LE G ++I TPGRL D +++ +
Sbjct: 105 QIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLD 164
Query: 179 LQRCTYLVLDEADRMLDMGFEPQIRKSLSKYAQTDR 286
+ L+LDEADR+LDMGF+ Q+ +S+ + R
Sbjct: 165 FRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRR 200
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 54.8 bits (126), Expect = 4e-08
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG-TTN 178
A QI + + + ++ + GG REQ L +IV+ATPGR+ID L + +
Sbjct: 251 AVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVD 310
Query: 179 LQRCTYLVLDEADRMLDMGFEPQI 250
L L+LDEADR+L GF +I
Sbjct: 311 LDDLAVLILDEADRLLQTGFATEI 334
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 54.4 bits (125), Expect = 6e-08
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Frame = +2
Query: 65 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL-QRCTYLVLDEADRMLDMGFE 241
V GG +R +A+ + G +VIATPGRL+D L+ + + LV+DEADR+L+ FE
Sbjct: 195 VIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFE 254
Query: 242 PQIRKSLSKYAQTDRL*CGQLLGPKK*RNLLRIT 343
+ K L +T + K ++L R++
Sbjct: 255 EDMNKILKILPKTRQTALFSATQTSKVKDLARVS 288
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 52.0 bits (119), Expect = 3e-07
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Frame = +2
Query: 65 VFGGAPKREQARDLERGVEIVIATPGRLIDFL---EKGTTNLQRCTYLVLDEADRMLDMG 235
+ GG +Q R L+ EIV+ATPGRL + + EK L ++ VLDEADRM++ G
Sbjct: 313 IVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERG 372
Query: 236 FEPQIRKSLSKYAQTDR 286
+++ L TD+
Sbjct: 373 HFRELQSILDLLPVTDK 389
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 51.6 bits (118), Expect = 4e-07
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTT 175
A+Q + + AD +R + GG + +Q L + +++ATPGRL D + KG +
Sbjct: 106 AEQFEALGADIS----LRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFS 161
Query: 176 NLQRCTYLVLDEADRMLDMGFEPQIRKSLSK 268
L+ YLVLDEADR+L+ FE + + L +
Sbjct: 162 -LKSLKYLVLDEADRLLNEDFEKSLNQILEE 191
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 51.6 bits (118), Expect = 4e-07
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +2
Query: 65 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQR-CTYLVLDEADRMLDMGFE 241
V GG K ++ L +G+ I+IATPGRL+D L+ + + + +++ DEAD +L++G+
Sbjct: 139 VMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYG 198
Query: 242 PQIRK 256
+I +
Sbjct: 199 KEIEQ 203
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 51.2 bits (117), Expect = 6e-07
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +2
Query: 107 ERGVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKSLSKYAQTD 283
E G ++I TPGRL D +++ + + L+LDEADR+LDMGF+ Q+ +S+ +
Sbjct: 133 EEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQR 192
Query: 284 R 286
R
Sbjct: 193 R 193
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Frame = +2
Query: 89 EQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKS 259
EQ R +I++ATPGRL D +E T L+ LVLDEAD +LDMGF I +
Sbjct: 174 EQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERI 233
Query: 260 LS 265
+S
Sbjct: 234 IS 235
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKL 330
++II + +RQT ++SAT P+EV+++
Sbjct: 231 ERIISAVPKERQTFLFSATVPEEVRQI 257
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Frame = +2
Query: 65 VFGGAPKREQARDLERG-VEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDM 232
V GG + R L++ +I++ATPGRL D ++ + T L LVLDEAD +LDM
Sbjct: 191 VIGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDM 250
Query: 233 GFEPQIRKSLS 265
GF +I + ++
Sbjct: 251 GFRREIERIIA 261
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 49.2 bits (112), Expect = 2e-06
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +2
Query: 65 VFGGAP-KREQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDM 232
V GG EQ R +I++ATPGRL D +E + T L LVLDEAD +LDM
Sbjct: 493 VIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDM 552
Query: 233 GFEPQIRKSLS 265
GF I + ++
Sbjct: 553 GFRRDIERIIA 563
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL-GDYIQINIGSLQLSANH-NILQIVDIC 423
++II + RQT ++SAT P+EV+++ L D+ IN H + Q+ I
Sbjct: 559 ERIIAAVPKQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIA 618
Query: 424 QEHEKENKLNVLLQE 468
+ L+VLL+E
Sbjct: 619 SLDRHFSLLHVLLKE 633
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 49.2 bits (112), Expect = 2e-06
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +2
Query: 2 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTN- 178
A Q+ + G +R + + GG Q L IVI TPGR+ LE
Sbjct: 139 AFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVP 198
Query: 179 --LQRCTYLVLDEADRMLDMGFEPQIR 253
R +LVLDEADR+LD+GF+ ++R
Sbjct: 199 PVFSRTKFLVLDEADRVLDVGFQDELR 225
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 48.0 bits (109), Expect = 5e-06
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +2
Query: 53 RNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML-D 229
R+ V GG +R Q +LE+GV+++IATPGR + +G L +LDE D + D
Sbjct: 482 RSMVVTGGFRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGD 541
Query: 230 MGFEPQIRKSLS 265
FE ++ ++
Sbjct: 542 DEFEAALQNLIN 553
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 47.2 bits (107), Expect = 9e-06
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +2
Query: 59 TCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLD 229
T + G K +Q R +I+IATPGRL+D +E T+ L ++DEAD +LD
Sbjct: 439 TLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLD 498
Query: 230 MGFEPQIRK 256
+GF + K
Sbjct: 499 LGFRRDVEK 507
Score = 33.9 bits (74), Expect = 0.089
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL-GDYIQINIGSLQLSANHNILQIVDICQ 426
+KII+ + RQ+L++SAT PKEV+++++ L D+ I+ L H+ ++ I
Sbjct: 506 EKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVRQSCIVA 565
Query: 427 EHEKENKLNVLLQEIGQSQEPGAKTII 507
HE L L + + P K I+
Sbjct: 566 PHESHFHLVPHLLKEHINNTPDYKIIV 592
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +2
Query: 59 TCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLD 229
T + G + +Q R +I+IATPGRL+D +E T+ L ++DEAD +LD
Sbjct: 486 TLIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLD 545
Query: 230 MGFEPQIRK 256
+GF+ + K
Sbjct: 546 LGFKRDVEK 554
Score = 33.5 bits (73), Expect = 0.12
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL-GDYIQINIGSLQLSANHNILQIVDICQ 426
+KII+ + RQ+L++SAT PKEV+++++ L D+ I+ L H+ ++ I
Sbjct: 553 EKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVA 612
Query: 427 EHEKENKLNVLLQEIGQSQEPGAKTII 507
HE L L + + P K I+
Sbjct: 613 PHESHFHLVPHLLKEHINNMPDYKIIV 639
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 71 GGAPKREQARDLERGVE-IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQ 247
GGA + Q L++ IV+ TPGR+ + + G + C +LVLDE D +L F
Sbjct: 228 GGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFRED 287
Query: 248 IRKSL 262
I + L
Sbjct: 288 IHRIL 292
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Frame = +2
Query: 95 ARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFE 241
+++LE V+I++ATPGRL+D + KG T L+ YLV+DE DR+L ++
Sbjct: 159 SQNLESAVDILVATPGRLMDHINNTKGFT-LEHLRYLVVDETDRLLREAYQ 208
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/78 (29%), Positives = 41/78 (52%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE 429
Q+I + D+Q +M+SAT KE++ + + ++ D ++I + H ++Q E
Sbjct: 213 QEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE 272
Query: 430 HEKENKLNVLLQEIGQSQ 483
EK KLN LL + +Q
Sbjct: 273 MEKNRKLNDLLDALDFNQ 290
Score = 33.9 bits (74), Expect = 0.089
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 122 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 229
IV+ TPGR++ + +L+ + +LDE D+ML+
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE 204
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQER 608
FV++ +A +++ + +P++C+H +Q+ER
Sbjct: 294 FVKSVSRAAELNKLLVECNFPSICIHSGMSQEER 327
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/78 (29%), Positives = 41/78 (52%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE 429
Q+I + D+Q +M+SAT KE++ + + ++ D ++I + H ++Q E
Sbjct: 130 QEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE 189
Query: 430 HEKENKLNVLLQEIGQSQ 483
EK KLN LL + +Q
Sbjct: 190 MEKTRKLNDLLDALDFNQ 207
Score = 33.9 bits (74), Expect = 0.089
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 122 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 229
IV+ TPGR++ + +L+ + +LDE D+ML+
Sbjct: 86 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE 121
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQER 608
FV++ +A +++ + +P++C+H +Q+ER
Sbjct: 211 FVKSVSRAAELNKLLVECNFPSICIHSGMSQEER 244
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/78 (29%), Positives = 41/78 (52%)
Frame = +1
Query: 250 QKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE 429
Q+I + D+Q +M+SAT KE++ + + ++ D ++I + H ++Q E
Sbjct: 213 QEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE 272
Query: 430 HEKENKLNVLLQEIGQSQ 483
EK KLN LL + +Q
Sbjct: 273 MEKTRKLNDLLDALDFNQ 290
Score = 33.9 bits (74), Expect = 0.089
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 122 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 229
IV+ TPGR++ + +L+ + +LDE D+ML+
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE 204
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQER 608
FV++ +A +++ + +P++C+H +Q+ER
Sbjct: 294 FVKSVSRAAELNKLLVECNFPSICIHSGMSQEER 327
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Frame = +2
Query: 65 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQ--RCTYLVLDEADRMLDMGF 238
+ GG + ++ + I++ PGRL+ +++ T N + + L+LDEADR+LD F
Sbjct: 177 LIGGREGVDVEKERVHEMNILVCAPGRLLQHMDE-TPNFECPQLQILILDEADRVLDSAF 235
Query: 239 EPQIRKSLSKYAQTDRL*CGQLLGPKK*RNLLRIT 343
+ Q+ +S+ + + KK ++L R++
Sbjct: 236 KGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLS 270
Score = 33.5 bits (73), Expect = 0.12
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +1
Query: 256 IIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSAN-HNILQIVDICQEH 432
II Q+ RQTL++SAT K+VK LA L D I++ + ++A +++Q V I
Sbjct: 242 IISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVE 301
Query: 433 EKENKL 450
+K + L
Sbjct: 302 KKLDML 307
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 33.5 bits (73), Expect = 0.12
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +3
Query: 507 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVL 620
FV+TK A+ + + + G+ +HG+ T+ +RD+++
Sbjct: 346 FVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIV 383
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +2
Query: 74 GAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML 226
GAP + + +VI TPG L ++ L LV DEAD ML
Sbjct: 203 GAPAATRGAPVS--AHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHML 251
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +2
Query: 119 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 250
+++I+TP RL ++ +L + YLVLDE+D++ + QI
Sbjct: 260 DVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQI 303
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 32.3 bits (70), Expect = 0.27
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Frame = +2
Query: 107 ERGVEIVIATPGRLIDFLE-KGTTNLQ--RCT-YLVLDEADRMLDMGFEPQI 250
+R +I+++TP L++ +E K L+ RC Y+V DEAD +L F+ QI
Sbjct: 207 DRLPDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQI 258
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 30.7 bits (66), Expect = 0.83
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +1
Query: 244 TNQKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDIC 423
+N K+ +I + Q + + P++++K D GDYI +G ++ A IL ++D
Sbjct: 22 SNAKV--EIFDEDQAIYLMISLPEQIEKF--DGRGDYI---LGKTKILARFEILDVIDAL 74
Query: 424 QEHEKENK 447
+ E ENK
Sbjct: 75 KIEEDENK 82
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +2
Query: 74 GAPKREQARDLER-GVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF---E 241
GAP Q L+ E ++ATP RL++ + ++ + LV+DE + G+
Sbjct: 232 GAPLDHQISGLKSVEPEFIVATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAV 291
Query: 242 PQIRKSLSKYAQT 280
I++++S QT
Sbjct: 292 KSIKQAISSKHQT 304
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +2
Query: 119 EIVIATPGRLIDFLEKG----TTNLQRCTYLVLDEADRMLDMGFEPQIRKSLS 265
EI+++TP + G T + + LVLDEAD +L G+E +R S
Sbjct: 174 EILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSVTS 226
>At4g03070.1 68417.m00415 2-oxoglutarate-dependent dioxygenase
(AOP1.2) identical to GI:16118887; contains PF03171:
2OG-Fe(II) oxygenase superfamily domain
Length = 322
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 300 SYLAQRSEETC*GLLGRLHSDQYRIITTFRKSQHSS 407
S L + C L GRLHS +R+I T +K+++S+
Sbjct: 230 SVLVMVGDSLCALLNGRLHSPYHRVIMTGKKTRYST 265
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 71 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE-PQ 247
GG +R ++ I++AT L LEK + LV+DE D + +
Sbjct: 186 GGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGS 245
Query: 248 IRKSLSKYAQTDR 286
+RK L+ ++ D+
Sbjct: 246 VRKLLTSFSSCDK 258
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 71 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE-PQ 247
GG +R ++ I++AT L LEK + LV+DE D + +
Sbjct: 29 GGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGS 88
Query: 248 IRKSLSKYAQTDR 286
+RK L+ ++ D+
Sbjct: 89 VRKLLTSFSSCDK 101
>At1g10210.1 68414.m01151 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK1) identical to mitogen-activated
protein kinase homolog 1 (AtMPK1)[Arabidopsis thaliana]
SWISS-PROT:Q39021; PMID:12119167
Length = 370
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -3
Query: 553 LMFLDMFSAFLLVSTKLLFSHQVLDFVQFLAIIHLIYFLFHVL 425
+ F D++ + L+ T L HQ++ Q L+ H YFLF +L
Sbjct: 104 MSFKDVYLVYELMDTDL---HQIIKSSQVLSNDHCQYFLFQLL 143
>At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 510
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 140 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 250
GR++DF+ T + C DEA R+L+M E Q+
Sbjct: 308 GRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQL 344
>At3g25960.1 68416.m03235 pyruvate kinase, putative similar to
pyruvate kinase, cytosolic isozyme [Nicotiana tabacum]
SWISS-PROT:Q42954
Length = 497
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = -1
Query: 258 DFLICGSNPIS-NIRSASSRTKYVH-RCK-LVVPFSKKSINLPGVAMTISTPLSKSRACS 88
D ++C IS N+ S V RC+ + +K++NLPG+ + + T K +
Sbjct: 135 DVILCSDGTISLNVLSCDKYLGLVRCRCENSALLGERKNVNLPGIVVDLPTLTEKDKEDI 194
Query: 87 LLGAPPN 67
+ PN
Sbjct: 195 MQWGVPN 201
>At3g04050.1 68416.m00427 pyruvate kinase, putative similar to
pyruvate kinase, cytosolic isozyme [Nicotiana tabacum]
SWISS-PROT:Q42954
Length = 510
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = -1
Query: 258 DFLICGSNPIS-NIRSASSRTKYVH-RCK-LVVPFSKKSINLPGVAMTISTPLSKSRACS 88
D ++C IS + S V RC+ V +K++NLPG+ + + T K +
Sbjct: 135 DVILCSDGTISLTVLSCDKNLGLVRARCENSAVLGERKNVNLPGIVVDLPTLTEKDQEDI 194
Query: 87 LLGAPPN 67
L PN
Sbjct: 195 LQWGVPN 201
>At2g28315.1 68415.m03441 transporter-related low similarity to
SP|Q9NTN3 UDP-glucuronic acid/UDP-N-acetylgalactosamine
transporter (UDP- GlcA/UDP-GalNAc transporter) {Homo
sapiens}, SP|Q95YI5 UDP-sugar transporter UST74c (Fringe
connection protein) {Drosophila melanogaster}
Length = 240
Score = 27.5 bits (58), Expect = 7.8
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -3
Query: 535 FSAFLLVSTKLLFSHQVLDFVQFLAIIHLIYFLFHVLDKYLQFEECCDLRKVV-MILY*S 359
FS FL++ ++QVL ++ ++ Y L H D + L V+ M+LY
Sbjct: 136 FSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYTLLH--DPFTPRNIAGILIAVLGMLLYSY 193
Query: 358 ECSLPSNPQQVSS 320
CS+ S +Q SS
Sbjct: 194 FCSVASKSKQASS 206
>At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 427
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 140 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 250
GR++DF+ T + C DEA R+L+M E Q+
Sbjct: 374 GRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQL 410
>At2g18170.1 68415.m02114 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK7) identical to mitogen-activated
protein kinase homolog 7 (AtMPK7)[Arabidopsis thaliana]
SWISS-PROT:Q39027; PMID:12119167
Length = 368
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 547 FLDMFSAFLLVSTKLLFSHQVLDFVQFLAIIHLIYFLFHVLD--KYL 413
F D++ + L+ T L HQ++ Q L+ H YFLF +L KYL
Sbjct: 106 FKDVYLVYELMDTDL---HQIIKSSQSLSDDHCKYFLFQLLRGLKYL 149
>At1g59580.2 68414.m06701 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK2) identical to mitogen-activated
protein kinase homolog 2 (AtMPK2)[Arabidopsis thaliana]
SWISS-PROT:Q39022; PMID:12119167
Length = 376
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -3
Query: 547 FLDMFSAFLLVSTKLLFSHQVLDFVQFLAIIHLIYFLFHVL 425
F D++ + L+ T L HQ++ Q L+ H YFLF +L
Sbjct: 106 FKDVYLVYELMDTDL---HQIIKSSQVLSNDHCQYFLFQLL 143
>At1g59580.1 68414.m06700 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK2) identical to mitogen-activated
protein kinase homolog 2 (AtMPK2)[Arabidopsis thaliana]
SWISS-PROT:Q39022; PMID:12119167
Length = 376
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -3
Query: 547 FLDMFSAFLLVSTKLLFSHQVLDFVQFLAIIHLIYFLFHVL 425
F D++ + L+ T L HQ++ Q L+ H YFLF +L
Sbjct: 106 FKDVYLVYELMDTDL---HQIIKSSQVLSNDHCQYFLFQLL 143
>At1g15820.1 68414.m01898 chlorophyll A-B binding protein,
chloroplast (LHCB6) nearly identical to Lhcb6 protein
[Arabidopsis thaliana] GI:4741960; contains Pfam profile
PF00504: Chlorophyll A-B binding protein
Length = 258
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 247 NQKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGD 351
+++ ++ PD Q++ W+ W K + A +Y GD
Sbjct: 158 SKRWVDFFNPDSQSVEWATPWSKTAENFA-NYTGD 191
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,964,040
Number of Sequences: 28952
Number of extensions: 290069
Number of successful extensions: 988
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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