Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0413
         (613 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    26   0.29 
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    24   0.88 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    24   0.88 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   3.5  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   8.2  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 471 RSCNNYWRCQ 500
           +SCN YW+CQ
Sbjct: 168 KSCNRYWQCQ 177


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 468 HRSCNNYWRC 497
           H SC+ YW+C
Sbjct: 35  HTSCDKYWKC 44


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 468 HRSCNNYWRC 497
           H SC+ YW+C
Sbjct: 35  HTSCDKYWKC 44


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 407 SRASPPEAKDLRTRLKMRISPSAEPTD 327
           S  S  E KD+ T L    SP+ +P D
Sbjct: 116 SPKSEKEEKDMETTLTPCASPNRKPDD 142


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 222 RVTDVKADDFSPCISSCQLR 281
           ++ ++ A+   PC+ S QLR
Sbjct: 62  KIVEMAANGIRPCVISRQLR 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,510
Number of Sequences: 336
Number of extensions: 2179
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)