Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0413
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 28 0.93
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 27 1.6
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac... 27 1.6
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 26 3.7
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 6.5
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.5
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 25 8.6
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 8.6
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 8.6
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 28.3 bits (60), Expect = 0.93
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 90 RMR*ELGSKSTSRCGTADTQARARAKMKAF 1
+MR ELG T RC D QA K+K F
Sbjct: 216 KMRLELGDHVTVRCPKTDLQADIEFKVKGF 245
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 27.5 bits (58), Expect = 1.6
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = -3
Query: 530 ASEEIDLGLDLTSPIVIA-APMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMR 354
A E L LD+TS ++ S+ + ++ S+ FSR+ PPE+K+ L
Sbjct: 115 AQTECSLALDMTSLLLSKFKENSIETISPFLKSTVPPSSLQFSRSQPPESKESDATLAKC 174
Query: 353 ISPSAEPTDAETLGTARTKLSRV 285
+ + + L A+ +L+ V
Sbjct: 175 WKEKSLTSSCKFLFEAKERLTSV 197
>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -2
Query: 444 EGDGSGSLSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 331
EG LSND L+ S + P D + ENAD+SFS D
Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -2
Query: 471 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 352
+ DN ++ SGS + D + + G+E+ +D EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -2
Query: 441 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSG 337
G GSG L ND L+ K S P +NA S G
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.4 bits (53), Expect = 6.5
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = -2
Query: 453 VVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESG 286
VV E D +LS LK ++G +AEN S T NSG S D V SG
Sbjct: 817 VVQEEDQRDTLS---LKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSG 869
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 8.6
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 337 SAEGEIRIFSRVLRSFASGGLALENVVAEA--TASVSLADNIIVSDI-GAAITIGDVK 501
S +GEI + V + + G L NVV EA A D +I SD+ AA + D+K
Sbjct: 320 SKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLK 377
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = +2
Query: 488 LAMSNLTPNQSLRTRSWTS--SQQLPR 562
+ N TP +LRTR W S SQ L R
Sbjct: 965 IGFKNATPEYTLRTRIWASLRSQTLYR 991
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 474 SDVTDNDVVCEGDGSGSLSNDVLKGK-SSGSERPQDAAENADF 349
SDV D +V+ E + +SN V + K S E D A++ F
Sbjct: 404 SDVEDTEVIIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMF 446
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,035
Number of Sequences: 5004
Number of extensions: 37813
Number of successful extensions: 114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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