Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0413
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0011 - 81673-81724,81826-82161,82426-82556,82629-82729,828... 31 0.72
12_01_0204 + 1539859-1540158 30 1.3
04_04_1110 + 30973202-30973870 30 1.3
10_07_0191 + 13934410-13934940 29 3.8
05_02_0163 - 7220885-7220997,7221026-7221082,7221208-7221309,722... 28 6.7
01_06_0034 + 25769436-25769701,25769749-25769887 28 6.7
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194... 27 8.9
12_01_0574 - 4697425-4698312 27 8.9
03_05_0892 + 28563151-28563669,28563977-28564035,28564170-285642... 27 8.9
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 27 8.9
>08_01_0011 -
81673-81724,81826-82161,82426-82556,82629-82729,
82849-82931,83154-83253,83366-83513,83664-83723,
84272-84345,84482-84554,84648-84699,84764-84897,
85096-85288,85386-85453
Length = 534
Score = 31.1 bits (67), Expect = 0.72
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -3
Query: 524 EEIDLGLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKM 357
+E+ LG++ S ++ A S+ L+A T AV S SPP K +++ KM
Sbjct: 447 QELLLGIEADSGGILGATASVCQTLTAAYTVAVEDVVDLSSPSPPLRKLSKSQKKM 502
>12_01_0204 + 1539859-1540158
Length = 99
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 168 YAGSWSPPGASDIINFSGRVTDVKADD 248
+AGSW+ G + +F GRVT V+ D
Sbjct: 38 HAGSWNGEGQGGLAHFGGRVTRVRRGD 64
>04_04_1110 + 30973202-30973870
Length = 222
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -3
Query: 506 LDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEP 333
L + + + +P S T+ S+R+T A A ++A P + L L M +A+P
Sbjct: 97 LPKAAALAVVSPTSSTVESSSRDTPAAAPVAAAAKAQVPASPSLDLSLGMSAMVAAQP 154
>10_07_0191 + 13934410-13934940
Length = 176
Score = 28.7 bits (61), Expect = 3.8
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Frame = -3
Query: 488 IVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGT 309
+ +AAP + ++ A ASA+T R P A + + +A P +A
Sbjct: 45 LALAAPSTSPRASTSTAGSAAASASTNGRRPSPPAATPSSAPRQAAFAAAAPPEATAAAA 104
Query: 308 A---------RTKLS----RVPT*LTRRNAGAEVISLDVSH-AAREVNDV 201
A RT L +VP R + +V+ L VSH AAR V D+
Sbjct: 105 ASPGSPSTCRRTALQLLDLQVPEQWRRDDGEVDVVDLVVSHPAARRVEDL 154
>05_02_0163 -
7220885-7220997,7221026-7221082,7221208-7221309,
7221337-7221802,7222042-7222355,7222725-7222914
Length = 413
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = -3
Query: 575 DRDLL*EVVDCWSNFASEEIDLGLDLTSPI-VIAAPMSLTMML-----SARETE 432
D D E V CW FAS +D ++L P+ V+A L + + SA ETE
Sbjct: 298 DVDRSAEFVQCWITFASVLVD-NMELQGPLQVVAVDQELVIQIERIGKSASETE 350
>01_06_0034 + 25769436-25769701,25769749-25769887
Length = 134
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 471 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 361
+V +D +C+G+G G + G ++ RPQ A E
Sbjct: 16 EVESSDTICQGEGPGEGGHPDPAGPAAALLRPQVAGE 52
>12_02_0959 +
24818310-24818369,24818689-24819136,24819265-24819482,
24819651-24819929
Length = 334
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = -2
Query: 471 DVTDNDVV---CEGDGSGSLSNDVLKGKSSGSER 379
++ +ND++ C G G+GS S DVL +SG E+
Sbjct: 73 ELQENDLLFFTCNGHGNGSCSFDVLIFDASGCEK 106
>12_01_0574 - 4697425-4698312
Length = 295
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Frame = +1
Query: 310 VPRVSASVGSAEGE------IRIFSRVLRSFASGGLALENVVAEATASVSLA 447
V + VG+AEGE +R+ +R R + S GLA+ +V A A+ +LA
Sbjct: 220 VAAAAGDVGAAEGELREAQRLRVAARRRRLWLSAGLAVLLLVVLAAAAAALA 271
>03_05_0892 +
28563151-28563669,28563977-28564035,28564170-28564295,
28564460-28564595,28564901-28565209
Length = 382
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 524 EEIDLGLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPE 387
+E LDL + P S ML +ETE++A S +P E
Sbjct: 273 KEAQKALDLMEQEELTLPPSQQKMLRVKETESLADHQKLSAGNPQE 318
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 456 DVVCEGDGSGSLSNDVLKGKSSGSERPQDAA 364
+V C G G G+++ D +G SG R DAA
Sbjct: 120 NVGCIGGGGGNITVDGFRGGGSGGGRGGDAA 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,439,601
Number of Sequences: 37544
Number of extensions: 296147
Number of successful extensions: 966
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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