Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0413
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical ...    28   4.6  
AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical ...    28   6.0  
AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical ...    28   6.0  
AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical
           protein C15C6.3 protein.
          Length = 541

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 20/92 (21%), Positives = 35/92 (38%)
 Frame = -3

Query: 497 TSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAET 318
           T P   A P  L +     + + +     +   +PP     + R K   +PSA   DA  
Sbjct: 82  TDPDKRAIPSLLDIRTHKPQMKDLGPQVIYPNRAPPNPSSSQNRFKRDSAPSAPARDAPM 141

Query: 317 LGTARTKLSRVPT*LTRRNAGAEVISLDVSHA 222
                    + P  +TRRN+     +  +S++
Sbjct: 142 FRGRTISQRQAPPQITRRNSSKSPPARGISYS 173


>Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical
           protein C04A11.2 protein.
          Length = 439

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = -3

Query: 497 TSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAET 318
           ++P+V      LT   SAR +   AS       +P   +++R       S +  P    T
Sbjct: 153 STPVVRNILQQLTTPRSARTSTRAASGNRTPTGTPNMTRNVRPVTNRTSSSNVSPAAQVT 212

Query: 317 LGTARTKLSRVP 282
            GT+    SR+P
Sbjct: 213 PGTSSNHRSRLP 224


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -3

Query: 446 ARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT*LTR 267
           A + E  +S +   ++   EAK  +   K  + PSA  +D  +  T  T +++ P   + 
Sbjct: 689 AEKPEGSSSGSATEKSKEIEAKSKKDDTKKPLEPSAASSDPSSSSTTTTTITKEPPTQSA 748

Query: 266 RNAGA 252
             +GA
Sbjct: 749 SASGA 753


>AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical
           protein ZK1055.7 protein.
          Length = 570

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 392 PEAKDLRTRLKMRISPSAEPTDAETLGT 309
           P + D + R+K+ +SP+A P DAE  GT
Sbjct: 491 PRSTDEKIRVKL-VSPAATPYDAEKAGT 517


>AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical
           protein Y45G12C.11 protein.
          Length = 779

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 168 YAGSWSPPGASDIINFSGRVTDVKADDFSP 257
           + GSW P   SD INF+  +T +     +P
Sbjct: 511 FCGSWYPDEFSDDINFTSTITPINYIHMNP 540


>AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical
           protein F56A4.6 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 168 YAGSWSPPGASDIINFSGRVTDVKADDFSP 257
           + GSW P   SD INF+  +T +     +P
Sbjct: 528 FCGSWYPDEFSDDINFTSTITPINYIHMNP 557


>AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical
           protein C30F12.1 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
 Frame = +3

Query: 174 GSWSPPGASDIINFSGRVTD---------VKADDFSPCISSCQLRRHPT 293
           GS+   G + II  SG+V           V+ +DF  C SSC    HP+
Sbjct: 45  GSYGEQGNAQIIGSSGQVLSTGPPPGLAPVQCNDFDSCYSSCDDISHPS 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,275,458
Number of Sequences: 27780
Number of extensions: 229914
Number of successful extensions: 647
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)