Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0413
         (613 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein...    29   3.2  
At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family pr...    28   5.6  
At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family pr...    28   5.6  
At1g64380.1 68414.m07296 AP2 domain-containing transcription fac...    28   5.6  
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill...    28   5.6  
At5g55510.1 68418.m06914 mitochondrial import inner membrane tra...    27   7.4  
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof...    27   7.4  

>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 831

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 480 CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAEN 358
           CS   +D+    EG+    L N+ L+ +S+GS+   D A N
Sbjct: 142 CSKRSSDSPKAMEGETRDLLVNEQLRMESAGSQEEGDKAHN 182


>At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 478

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 23/88 (26%), Positives = 36/88 (40%)
 Frame = -3

Query: 467 SLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSR 288
           ++ M   A E    +S+        PE  ++  R   R    A  TD     +  TK +R
Sbjct: 217 AVAMTAPAIEITGTSSSVVSKSEIEPEKTNVDDR--KRKEREATTTDETESRSEETKQAR 274

Query: 287 VPT*LTRRNAGAEVISLDVSHAAREVND 204
           V T  T+R+  AEV +L        +N+
Sbjct: 275 VSTTSTKRSRAAEVHNLSERKRRDRINE 302


>At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 407

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 23/88 (26%), Positives = 36/88 (40%)
 Frame = -3

Query: 467 SLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSR 288
           ++ M   A E    +S+        PE  ++  R   R    A  TD     +  TK +R
Sbjct: 146 AVAMTAPAIEITGTSSSVVSKSEIEPEKTNVDDR--KRKEREATTTDETESRSEETKQAR 203

Query: 287 VPT*LTRRNAGAEVISLDVSHAAREVND 204
           V T  T+R+  AEV +L        +N+
Sbjct: 204 VSTTSTKRSRAAEVHNLSERKRRDRINE 231


>At1g64380.1 68414.m07296 AP2 domain-containing transcription
           factor, putative contains Pfam profile: PF00847 AP2
           domain
          Length = 335

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -3

Query: 539 SNFASEEIDLGLDLTSPIVIAAPMSLTMMLSARETEAVASATT-FSRASPPEAKDLRTRL 363
           +NF+ +  ++   L+  I+   P +L  + S     +V SATT F+  +PP    L + +
Sbjct: 10  NNFSPKISEIRASLSQIILAGGPNTLDSIFSLLTPSSVESATTSFNTHNPPPPPQLGSSV 69

Query: 362 KMR 354
            +R
Sbjct: 70  YLR 72


>At1g44120.1 68414.m05096 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2114

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 480  CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 361
            CSS  ++  VV EG+G   ++ ++ + KS+  E   D+ E
Sbjct: 990  CSSHPSNRLVVMEGNGLEIIAENLQRNKSNTQENSSDSEE 1029


>At5g55510.1 68418.m06914 mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein
           weak similarity to SP|Q99595 Mitochondrial import inner
           membrane translocase subunit TIM17 A {Homo sapiens};
           contains Pfam profile PF02466: Mitochondrial import
           inner membrane translocase subunit Tim17
          Length = 186

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 271 HDEMQGLKSSALTSVTRPEKLMMSDA 194
           HDE++G  SS   S+T+P+KL    A
Sbjct: 160 HDEIKGAFSSFCNSLTKPKKLKFPHA 185


>At5g42870.1 68418.m05225 lipin family protein contains Pfam
           profile: PF04571 lipin, N-terminal conserved region
          Length = 930

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 24/78 (30%), Positives = 30/78 (38%)
 Frame = -2

Query: 486 SYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNS 307
           S   S V D + +   D   S  +      +SG    Q   E   FSFS  D C   GNS
Sbjct: 353 SSTGSPVQDENKITIKDMHISAGDFEKSQSASGESILQPEIEEEQFSFSDLDECKPGGNS 412

Query: 306 QD*VESGADVADTTKCRG 253
                 G+  +DT K  G
Sbjct: 413 ----SVGSSSSDTVKVDG 426


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,804,127
Number of Sequences: 28952
Number of extensions: 218005
Number of successful extensions: 607
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)