Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0412
         (539 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    23   1.7  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   1.7  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   9.2  

>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 132 FGSTRKHCLDKPKQVLSLLNRMI 200
           F   +KH   KP Q+L+LL  +I
Sbjct: 34  FRLCKKHKTKKPVQILALLQEII 56


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 132 FGSTRKHCLDKPKQVLSLLNRMI 200
           F   +KH   KP Q+L+LL  +I
Sbjct: 34  FRLCKKHKTKKPVQILALLQEII 56


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +1

Query: 430 MVGSYPPKTEIQSYTXPPEDAPSGIWPXVV 519
           +  +YPP  ++     PP   P+ I P  +
Sbjct: 170 LCNNYPPLPQVPPLPLPPIFPPTMINPSAI 199


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,320
Number of Sequences: 336
Number of extensions: 2707
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)