Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0412
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1 |Schizosaccha... 71 1e-13
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 31 0.14
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 27 1.8
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 26 4.1
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 26 4.1
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 26 4.1
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 5.4
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 25 5.4
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 25 7.2
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 25 7.2
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 25 7.2
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 25 9.5
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 25 9.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 9.5
>SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 70.9 bits (166), Expect = 1e-13
Identities = 31/72 (43%), Positives = 47/72 (65%)
Frame = +1
Query: 289 KKQVFVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKTEIQS 468
+K+ F IKEG +++I + F VQ E++ GL+YVQ R G VDK + M+GSY P
Sbjct: 100 RKKGFTIKEGSEFKIGVKFRVQHEVISGLRYVQTVRRRGFVVDKTSTMIGSYGPSETPYD 159
Query: 469 YTXPPEDAPSGI 504
+T P++AP+G+
Sbjct: 160 FTSEPDEAPTGM 171
Score = 39.1 bits (87), Expect = 4e-04
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +2
Query: 83 EKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRD 250
+K++ E + D EDESL+K+K +L G +D R V++ KL+L V GRD
Sbjct: 32 KKSLNEYMKMDAEDESLQKWKASL---GITGTGYSPSNDRRTVVILKLSLLVDGRD 84
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 30.7 bits (66), Expect = 0.14
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 83 EKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVE 190
EKT++E++ +++ SL Y+E L + QA V +E
Sbjct: 1613 EKTLKEVIEDLEKNNSLHAYEEEALNEEQASLVFLE 1648
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 517 RPSAISRTAHPRGASCKTESQ 455
RPS S +AHPRG+ + E++
Sbjct: 44 RPSITSESAHPRGSDLEQETE 64
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 249 MMRAGSHWGLDRPQKAGIRDKGGCTIPNKDRFY 347
M+ GS + GIRDKGG I NK+ Y
Sbjct: 69 MVEIGSKKSRNDNDSEGIRDKGGVEISNKNDPY 101
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 304 VIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVG 438
++ G+ ++I I ++VHG+KY +G+ D +VG
Sbjct: 265 LLSGGLDGHVKIYNISDWKVVHGMKYSGPILSMGLSPDSCNLVVG 309
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 327 PNKDRFYRSTRDRARSEVRAEDLQTGRSS*QDDS 428
P+ R TR RARS A ++ SS DDS
Sbjct: 234 PDLSSLIRLTRSRARSSNEASYVEKDESSNSDDS 267
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 379 YVQKTYRLGVPVDKMTHMVGSYPPKTEIQSYTXPPEDAPSGIWPXVVQRQ 528
YV+K + +PV + G P + + SY+ PE G +P + R+
Sbjct: 79 YVKKD--VAIPVKAEEGITGILPVRGQKYSYSEAPEHEKIGFFPKDIDRK 126
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 258 LASSRPTTHN-ASFFTITLRGSSGSTMTAPAWACPSSASL 142
L S+PTT+N A+FF+I SS S+ AP S + L
Sbjct: 224 LTPSQPTTYNRANFFSIN-DASSDSSSDAPLRTLSSPSRL 262
>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 155 LGQAQAGAVIVEPDDPRKVIVKKLALCVVGRDDASWIS 268
LG ++AGA+ V+ D P +K L + + A W+S
Sbjct: 128 LGLSRAGAIAVQDDSPLWKYLKDLVM-NIEEPQARWLS 164
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 418 KMTHMVGSYPPKTEIQSYTXPPEDAPSGIWPXVV 519
K+ + GS PP + + + PED SG VV
Sbjct: 322 KVYPLYGSLPPNQQQRIFEPTPEDTKSGYGRKVV 355
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +3
Query: 318 CTIPNKDRFYRSTRDRARSEVRAEDLQTG 404
CT P FY ST+D A +EVR E L+ G
Sbjct: 28 CT-PALKSFY-STQDPALNEVRTEKLKNG 54
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 113 DQEDESLRKYKEALLGQAQAGAVIV 187
D+ E+++ YK ALLG +++V
Sbjct: 454 DRPQEAIKSYKRALLGSQTNSSILV 478
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 318 CTIPNKDRFYRSTRDRARSEVRAEDLQTG 404
CT P+ +R Y ++RD E + L +G
Sbjct: 348 CTSPDGERIYAASRDSIIYEYSSRHLNSG 376
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 91 GLLWRWLI*GFDFFFLCI 38
GLLW WLI FF +C+
Sbjct: 99 GLLWAWLI--AMFFLICV 114
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 333 YSVLYTLLYHEYLLFEVGQVPSEIQLASSRPTT 235
Y L TLL L++V +PS ++ A+ TT
Sbjct: 1573 YMHLVTLLKERSYLYKVSNIPSLLESAAKLSTT 1605
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,313
Number of Sequences: 5004
Number of extensions: 44290
Number of successful extensions: 129
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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