Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0412
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0132 - 12166009-12166089,12166197-12166321,12166489-121667... 66 2e-11
02_05_0539 + 29846439-29846711,29846819-29846885,29847832-298480... 61 5e-10
01_06_1776 - 39815634-39815714,39815761-39815927,39816278-398164... 58 6e-09
04_03_0926 - 20861383-20862198,20862359-20862430,20862938-208631... 30 1.0
08_02_0925 - 22668875-22668889,22668942-22669018,22669383-226695... 29 1.8
12_02_0279 - 16704284-16704925 29 2.4
08_02_1554 + 27841801-27842007,27842282-27842455,27842554-278426... 29 2.4
06_01_0025 - 244068-244177,244279-244333,244500-244527,244621-24... 29 2.4
05_05_0199 - 23165776-23166259,23166356-23167128,23167633-231678... 29 2.4
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446... 28 4.1
03_02_0930 - 12480983-12481888 28 4.1
12_01_0341 - 2621503-2621892 28 5.5
09_02_0566 + 10732359-10732497,10733114-10733267,10733448-107335... 28 5.5
10_08_0304 - 16640937-16642877 27 7.2
09_02_0417 - 8915604-8916779,8916863-8917270 27 9.6
08_02_0204 - 14253258-14253383,14253685-14253878,14254029-142547... 27 9.6
>06_02_0132 -
12166009-12166089,12166197-12166321,12166489-12166710,
12168194-12168260,12168424-12168741
Length = 270
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/73 (38%), Positives = 43/73 (58%)
Frame = +1
Query: 289 KKQVFVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKTEIQS 468
K+ F +KEG YR++ F V IV GL+Y ++ G+ VDK M+G++ P+ E +
Sbjct: 162 KEPWFTLKEGSTYRLKFTFSVSSNIVSGLRYTNTVWKAGIRVDKTKEMLGTFSPQLEPYT 221
Query: 469 YTXPPEDAPSGIW 507
Y P E PSG++
Sbjct: 222 YVTPEETTPSGVF 234
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +2
Query: 80 PEKTIEEILAADQEDESLRKYKEALLGQAQAGAV--IVEPDDPRKVIVKKLALCVVGRDD 253
P +I+E L D+EDESLR++KE LLG +V +EPD V + L + GR D
Sbjct: 94 PRVSIKEQLEMDKEDESLRRWKEQLLGSVDLNSVGESLEPD----VRITSLCILSPGRPD 149
>02_05_0539 +
29846439-29846711,29846819-29846885,29847832-29848050,
29848200-29848324,29848423-29848503
Length = 254
Score = 61.3 bits (142), Expect = 5e-10
Identities = 25/69 (36%), Positives = 40/69 (57%)
Frame = +1
Query: 301 FVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKTEIQSYTXP 480
F +KEG Y+++ F V IV GL+Y ++ G+ VD M+G++ P+ E +Y P
Sbjct: 150 FTLKEGSLYKLKFTFSVSNNIVSGLRYTNAVWKTGIKVDSHKEMLGTFSPQPEPYTYVTP 209
Query: 481 PEDAPSGIW 507
E PSG++
Sbjct: 210 EETTPSGMF 218
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +2
Query: 80 PEKTIEEILAADQEDESLRKYKEALLGQAQAGAV--IVEPDDPRKVIVKKLALCVVGRDD 253
P +I++ L D++DESLR++KE LLG +V +EPD V + LA+ GR D
Sbjct: 79 PRVSIKDQLEKDKDDESLRRWKEQLLGSVDLNSVGETLEPD----VKIMSLAILSPGRPD 134
>01_06_1776 -
39815634-39815714,39815761-39815927,39816278-39816496,
39816614-39816680,39816771-39816932
Length = 231
Score = 57.6 bits (133), Expect = 6e-09
Identities = 26/73 (35%), Positives = 39/73 (53%)
Frame = +1
Query: 289 KKQVFVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKTEIQS 468
K F +K+G Y R FIV IV GLKY ++ GV V+ M+G++ P+ E +
Sbjct: 109 KGYAFALKDGSTYSFRFSFIVSNNIVSGLKYTNTVWKTGVRVENQKVMLGTFSPQLEPYT 168
Query: 469 YTXPPEDAPSGIW 507
Y E P+G++
Sbjct: 169 YEGEEETTPAGMF 181
Score = 35.9 bits (79), Expect = 0.021
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +2
Query: 80 PEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRD 250
P+ ++E L D++DESLR++KE LLGQ + E +P VK L L ++ D
Sbjct: 42 PQVPLKEQLELDKDDESLRRWKEQLLGQVDT-EQLGETAEPE---VKVLNLTILSPD 94
>04_03_0926 -
20861383-20862198,20862359-20862430,20862938-20863123,
20863214-20863304,20863698-20863852,20864501-20864579,
20866797-20867263
Length = 621
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = +2
Query: 71 KPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRD 250
KPPP E + AAD E E+ RK +E A V P P + A VV R+
Sbjct: 35 KPPPPPAEEGVAAADAEGEARRKQRELRAAAADKRLRAVAP-SPAAAAPRPPAPEVVARE 93
>08_02_0925 -
22668875-22668889,22668942-22669018,22669383-22669500,
22669662-22669685,22670067-22670360,22670456-22670563,
22671098-22671946
Length = 494
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = -2
Query: 526 DAVRPSAISRTAHPRGASCKTESQFWGDRSRP 431
DAVR SAISR+ R S +W RSRP
Sbjct: 49 DAVRTSAISRSWIHRWESAPDLRHYWPRRSRP 80
>12_02_0279 - 16704284-16704925
Length = 213
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 266 RSSSHHRAQPHTMLASSLSLCEDH 195
+ S H+ P + L S+ SLCEDH
Sbjct: 157 QDSCSHKKSPESCLISAASLCEDH 180
>08_02_1554 +
27841801-27842007,27842282-27842455,27842554-27842653,
27843273-27843725,27843936-27844469,27844500-27844580,
27844690-27844781,27844890-27844963,27845071-27845293,
27845429-27845522,27845607-27845761,27845899-27846129,
27846803-27847003,27847257-27847382,27847497-27847558,
27847775-27847892,27848040-27848324,27848475-27848513
Length = 1082
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 86 KTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVV 241
K + + AAD++ KYK LG + AV+V PD + + L L V
Sbjct: 197 KALLRVQAADRKYVHKFKYKGVELGVILSYAVLVHPDTAARASISNLQLVTV 248
>06_01_0025 -
244068-244177,244279-244333,244500-244527,244621-244691,
244829-244926,245069-245186,245573-245636,245744-245808,
245893-245928,246255-246311,246422-246691
Length = 323
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +3
Query: 315 GCTIPNKDRFYRSTRDRARSEVRAEDLQTGRSS*QDDSYGRL 440
G D F+ ST RS VR DL+TG+ Q + GRL
Sbjct: 91 GLLYGGNDTFFESTGLYHRSSVRRVDLKTGKVLVQHEMDGRL 132
>05_05_0199 -
23165776-23166259,23166356-23167128,23167633-23167869,
23167973-23168197
Length = 572
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Frame = -3
Query: 273 PSEIQLASSRPTT----HNASFFTITLRGSSGST---MTAPAWACPSSASLYF 136
P + L +SRP + + S F+ L G +GS+ MT P+ PSS S YF
Sbjct: 5 PGSLPLVNSRPVSLSLAASRSSFSSLLSGGAGSSLNLMTPPSSLPPSSPSSYF 57
>03_03_0186 +
15243150-15243563,15243685-15243777,15244604-15244666,
15245028-15245114,15245197-15245349,15245422-15245579,
15246458-15246692,15246782-15246892,15246942-15246968,
15247269-15248327,15248432-15248692,15249011-15249196,
15249642-15250793,15250886-15251236,15251343-15251738
Length = 1581
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/36 (30%), Positives = 25/36 (69%)
Frame = -3
Query: 375 QTVHDLALNDKIDPYSVLYTLLYHEYLLFEVGQVPS 268
++V +++L+ ++D Y VLY + E+L+ + Q+P+
Sbjct: 286 ESVLNVSLSGQVDDYCVLYCERFMEFLIDMLSQLPT 321
>03_02_0930 - 12480983-12481888
Length = 301
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 318 CTIPNKDRFYRSTRDRARSEVRAEDL 395
C PN++ +Y ++ DRAR E R + L
Sbjct: 66 CYCPNRESYYLNSADRARQEDRQDML 91
>12_01_0341 - 2621503-2621892
Length = 129
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +2
Query: 74 PPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRDD 253
PPP + + ++D +DE+LR + GAV+ RK +KK+ L +D
Sbjct: 29 PPPPPPLNGV-SSDDDDEALRPATADMADDPPGGAVVRVKLVVRKQELKKMLL----HND 83
Query: 254 ASWISL 271
A+ ISL
Sbjct: 84 AAAISL 89
>09_02_0566 +
10732359-10732497,10733114-10733267,10733448-10733519,
10733701-10733769,10734430-10734501,10734590-10734661,
10734769-10734840,10734928-10734999,10735121-10735192,
10735293-10735364,10735435-10735506,10735826-10735897,
10736039-10736104,10736638-10736676,10736787-10736845,
10737166-10737545,10737629-10737824,10738012-10738179,
10738618-10738736,10738873-10739083,10739163-10739403,
10739830-10739980,10740469-10740828
Length = 999
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2
Query: 211 HFARIIRFNNDSTCLGLSKQCFLVLPKGFILL 116
HFA I+ F NDST L K+ F V +G ++L
Sbjct: 493 HFAEIV-FTNDSTYCSLGKRRFNVFIQGRMVL 523
>10_08_0304 - 16640937-16642877
Length = 646
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 459 DSVLHXAPRGCAVRDMAXGRTASTA 533
D V H C+ RDM GRT S A
Sbjct: 435 DDVTHLIEVSCSYRDMETGRTTSVA 459
>09_02_0417 - 8915604-8916779,8916863-8917270
Length = 527
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 379 YVQKTYRLGVPVDKMTHMVGSYPPKTEIQSYTXPPEDAPSGIWP 510
+ Q Y + P H YPP T+ Y PP+ AP + P
Sbjct: 38 FSQPPYAMNFPFPPFPH----YPPYTQNLQYAVPPQYAPYTLPP 77
>08_02_0204 - 14253258-14253383,14253685-14253878,14254029-14254743,
14254811-14254837,14258779-14258838,14263174-14264844,
14267402-14267518,14267593-14267763,14270248-14270346,
14271684-14271770,14272392-14272475,14272929-14273068,
14274414-14274494,14275492-14275680,14275986-14276022
Length = 1265
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 282 GQVPSEIQLASSRPTTHNASFFTITLRGSSGSTMTAPAWA 163
G +P EIQL THN + +T+ + S + A WA
Sbjct: 933 GDIPEEIQLE-----THNRNSYTVRVDKSQEKVIFAAGWA 967
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,408,898
Number of Sequences: 37544
Number of extensions: 312775
Number of successful extensions: 934
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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