Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0412
(539 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17) 46 3e-05
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 30 1.1
SB_48238| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3) 29 3.2
SB_9112| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_5326| Best HMM Match : HEAT (HMM E-Value=3.1e-05) 28 4.2
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 28 5.6
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94) 27 7.4
SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5) 27 9.8
SB_38350| Best HMM Match : OCIA (HMM E-Value=6.7) 27 9.8
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8) 27 9.8
>SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17)
Length = 339
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +2
Query: 68 YKPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLAL 232
Y PP +KT EEI D +DE+L KYK+ LLG P P+ V+V+K+A+
Sbjct: 22 YVPPAQKTWEEIQNLDADDEALVKYKQTLLGVTPEEL----PKGPKNVVVEKVAI 72
Score = 31.9 bits (69), Expect = 0.34
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 289 KKQVFVIKEGVQYRIRIDF-IVQREIVHGLKYVQKTYRLGVPVDK 420
K IKEG Y+I+I F + +I+ GL+ YR G+ V K
Sbjct: 139 KDSPITIKEGTYYKIKIIFKVYNDQIISGLRLHNLFYRKGIRVGK 183
Score = 31.9 bits (69), Expect = 0.34
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 418 KMTHMVGSYPPKTEIQSYTXPPEDAPSGI 504
K + MVGSY PK E Y P ++AP G+
Sbjct: 277 KDSFMVGSYGPKFEPHEYLTPIDEAPKGM 305
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 92 IEEILAADQEDESLRKYKEALLGQAQAGA-VIVEPDDPRKVIVKKLALCVVGRDDAS 259
I ++ +D ED++ YKE G+ +GA EPDD + ++++ + D +
Sbjct: 781 IRQLAMSDSEDDASSSYKEKPAGRRSSGASQNSEPDDDILTLSQRISQAAISDDSTA 837
>SB_48238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 143 KEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRDDA 256
+E LL + G IVEP DP +I + +A C++ R A
Sbjct: 8 REVLL-EGVEGVRIVEPCDPSGLIAENVAHCILSRGKA 44
>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
Length = 1168
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 98 PLWSSLEVAYMRI*FLLPLYPLRVYGLLQVSC 3
PLW++L +A M++ P P V LL ++C
Sbjct: 743 PLWAALAIALMQVTTTHPFAPFSVLLLLVITC 774
>SB_9112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 143 KEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRDDA 256
+E LL + G IVEP DP +I + +A C++ R A
Sbjct: 32 REVLL-EGVEGVRIVEPCDPSGLIAENVAHCILSRGKA 68
>SB_5326| Best HMM Match : HEAT (HMM E-Value=3.1e-05)
Length = 538
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 363 DLALNDKIDPYSVLYTLLYHEYLLFEV 283
D L+D Y +++T LY EYL+ EV
Sbjct: 390 DYVLSDPRTQYELIHTWLYQEYLMQEV 416
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +2
Query: 11 PEVAHTPXXXXXXXXIKSSYKPP----PEKTIEEILAADQEDESLRKY 142
P H P +Y+PP P T + AADQ+DE+L++Y
Sbjct: 285 PPAVHAPYHPPPAYS-NPTYQPPASTYPPPTSTGMAAADQKDETLKRY 331
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 83 EKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRK 208
E + EE AAD+E E K EA +A+A +VE ++P K
Sbjct: 1059 ETSFEEAEAADEETEEPVKEAEASFEEAEAP--VVETEEPVK 1098
>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
Length = 1058
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 74 PPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRK 208
PP T+ E AD DES K+A++ + I EP P+K
Sbjct: 48 PPQSPTVSEASTADTADESGSTEKDAVVEE----EAIKEPSGPQK 88
>SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5)
Length = 722
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 181 DSTCLGLSKQCFLVLPKGFILLVSSKDLLYGLLWR 77
+ TC +C+LVLP+ F VS+ LY L +R
Sbjct: 477 NETCPEEIFECWLVLPRLFSFFVSAAAKLYRLRYR 511
>SB_38350| Best HMM Match : OCIA (HMM E-Value=6.7)
Length = 537
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 178 STCLGLSKQCFLVLPKGFI 122
S+C + CFLVLP+ FI
Sbjct: 384 SSCFIMDSSCFLVLPESFI 402
>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
Length = 404
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 71 KPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKK 223
K P K E +A +D + K AL + + + PDD K+I+ K
Sbjct: 207 KRKPPKPSEHQPSASPKDIVIGSRKRALTSEGPLRSKLYRPDDFSKIIINK 257
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,350,329
Number of Sequences: 59808
Number of extensions: 350444
Number of successful extensions: 945
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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