Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0412
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40426-5|AAF99947.1|  191|Caenorhabditis elegans Rho gdi protein...    74   8e-14
U36431-1|AAD10299.1|  191|Caenorhabditis elegans Rho GDP dissoci...    74   8e-14
Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   8.6  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   8.6  
AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical ...    27   8.6  
AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical ...    27   8.6  
AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U40426-5|AAF99947.1|  191|Caenorhabditis elegans Rho gdi protein 1
           protein.
          Length = 191

 Score = 73.7 bits (173), Expect = 8e-14
 Identities = 35/66 (53%), Positives = 42/66 (63%)
 Frame = +1

Query: 307 IKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKTEIQSYTXPPE 486
           IKEG  YR+   F VQREI  GL Y  K  R G+ V+   +M+GSY PK EIQ Y  P E
Sbjct: 94  IKEGSNYRLSFAFHVQREITSGLHYKHKVKRSGITVENEKYMMGSYAPKLEIQEYKSPNE 153

Query: 487 DAPSGI 504
           +APSG+
Sbjct: 154 EAPSGM 159



 Score = 64.1 bits (149), Expect = 6e-11
 Identities = 32/65 (49%), Positives = 46/65 (70%)
 Frame = +2

Query: 68  YKPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR 247
           YK PP+K+I+E+L AD+EDESL+ YK  LLGQ   G VIV+  +P +VIV+ + L + G+
Sbjct: 16  YKQPPQKSIDELLNADKEDESLKVYKAKLLGQ---GTVIVDEKNPLRVIVRSVELLINGK 72

Query: 248 DDASW 262
              S+
Sbjct: 73  TAQSF 77


>U36431-1|AAD10299.1|  191|Caenorhabditis elegans Rho GDP
           dissociation inhibitor protein.
          Length = 191

 Score = 73.7 bits (173), Expect = 8e-14
 Identities = 35/66 (53%), Positives = 42/66 (63%)
 Frame = +1

Query: 307 IKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKTEIQSYTXPPE 486
           IKEG  YR+   F VQREI  GL Y  K  R G+ V+   +M+GSY PK EIQ Y  P E
Sbjct: 94  IKEGSNYRLSFAFHVQREITSGLHYKHKVKRSGITVENEKYMMGSYAPKLEIQEYKSPNE 153

Query: 487 DAPSGI 504
           +APSG+
Sbjct: 154 EAPSGM 159



 Score = 64.1 bits (149), Expect = 6e-11
 Identities = 32/65 (49%), Positives = 46/65 (70%)
 Frame = +2

Query: 68  YKPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR 247
           YK PP+K+I+E+L AD+EDESL+ YK  LLGQ   G VIV+  +P +VIV+ + L + G+
Sbjct: 16  YKQPPQKSIDELLNADKEDESLKVYKAKLLGQ---GTVIVDEKNPLRVIVRSVELLINGK 72

Query: 248 DDASW 262
              S+
Sbjct: 73  TAQSF 77


>Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical
           protein F36H2.1c protein.
          Length = 1071

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 330 NKDRFYRSTRDRARSEVRAEDLQTG 404
           N +++ + TRD  R E+R+ D++ G
Sbjct: 182 NSEKYEKLTRDGTRIEIRSADIEVG 206


>Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical
           protein F36H2.1b protein.
          Length = 1035

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 330 NKDRFYRSTRDRARSEVRAEDLQTG 404
           N +++ + TRD  R E+R+ D++ G
Sbjct: 146 NSEKYEKLTRDGTRIEIRSADIEVG 170


>Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical
           protein F36H2.1a protein.
          Length = 1074

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 330 NKDRFYRSTRDRARSEVRAEDLQTG 404
           N +++ + TRD  R E+R+ D++ G
Sbjct: 185 NSEKYEKLTRDGTRIEIRSADIEVG 209


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 276   VPSEIQLASSRPTT-HNASFFTITLRGSSGSTMTAPAWACPSSASL 142
             +P EI      P+T H+ +  T T+RG  GS         P SAS+
Sbjct: 12716 IPDEISSRFGDPSTMHSETNITTTIRGREGSADAKTPLVEPLSASV 12761


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 276   VPSEIQLASSRPTT-HNASFFTITLRGSSGSTMTAPAWACPSSASL 142
             +P EI      P+T H+ +  T T+RG  GS         P SAS+
Sbjct: 12716 IPDEISSRFGDPSTMHSETNITTTIRGREGSADAKTPLVEPLSASV 12761


>AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical
           protein F36H2.1c protein.
          Length = 1071

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 330 NKDRFYRSTRDRARSEVRAEDLQTG 404
           N +++ + TRD  R E+R+ D++ G
Sbjct: 182 NSEKYEKLTRDGTRIEIRSADIEVG 206


>AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical
           protein F36H2.1b protein.
          Length = 1035

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 330 NKDRFYRSTRDRARSEVRAEDLQTG 404
           N +++ + TRD  R E+R+ D++ G
Sbjct: 146 NSEKYEKLTRDGTRIEIRSADIEVG 170


>AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical
           protein F36H2.1a protein.
          Length = 1074

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 330 NKDRFYRSTRDRARSEVRAEDLQTG 404
           N +++ + TRD  R E+R+ D++ G
Sbjct: 185 NSEKYEKLTRDGTRIEIRSADIEVG 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,470,745
Number of Sequences: 27780
Number of extensions: 254200
Number of successful extensions: 789
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)