Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0412
         (539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07880.1 68416.m00963 Rho GDP-dissociation inhibitor family p...    61   5e-10
At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family p...    56   1e-08
At1g12070.1 68414.m01393 Rho GDP-dissociation inhibitor family p...    50   1e-06
At3g22380.1 68416.m02825 expressed protein                             31   0.65 
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34...    28   3.5  
At1g06730.1 68414.m00715 pfkB-type carbohydrate kinase family pr...    28   3.5  
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro...    28   4.6  
At2g05170.1 68415.m00544 vacuolar protein sorting 11 family prot...    28   4.6  
At3g27910.1 68416.m03482 kelch repeat-containing protein contain...    27   6.1  
At2g36720.1 68415.m04505 PHD finger transcription factor, putative     27   6.1  
At2g34357.1 68415.m04206 expressed protein                             27   6.1  

>At3g07880.1 68416.m00963 Rho GDP-dissociation inhibitor family
           protein similar to SP|P52565 Rho GDP-dissociation
           inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
           contains Pfam profile PF02115: RHO protein GDP
           dissociation inhibitor
          Length = 240

 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 25/69 (36%), Positives = 41/69 (59%)
 Frame = +1

Query: 301 FVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKTEIQSYTXP 480
           F +KEG +Y ++  F V   IV GL+Y    ++ GV VD+   M+G++ P+ E  ++  P
Sbjct: 137 FTLKEGSKYNLKFTFHVNNNIVSGLRYTNTVWKTGVKVDRAKEMLGTFSPQLEPYNHVMP 196

Query: 481 PEDAPSGIW 507
            E  PSG++
Sbjct: 197 EETTPSGMF 205



 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 27/58 (46%), Positives = 35/58 (60%)
 Frame = +2

Query: 80  PEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRDD 253
           P+ TI+E L  D++DESLRK+KE LLG       I E  DP +V +  LA+   GR D
Sbjct: 66  PQYTIKEHLEKDKDDESLRKWKEQLLGSVDV-TNIGETLDP-EVRIDSLAIISPGRPD 121


>At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family
           protein similar to SP|P52565 Rho GDP-dissociation
           inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
           contains Pfam profile PF02115: RHO protein GDP
           dissociation inhibitor
          Length = 223

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 26/69 (37%), Positives = 39/69 (56%)
 Frame = +1

Query: 301 FVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKTEIQSYTXP 480
           F IKEG +Y +  +F V   IV GL+Y    ++ GV VD    M+G++ P+ E   +  P
Sbjct: 122 FTIKEGSKYTLVFNFRVTNNIVSGLRYNNTVWKTGVKVDSTKAMLGTFSPQAESYQHVMP 181

Query: 481 PEDAPSGIW 507
            E  PSG++
Sbjct: 182 EEMTPSGMF 190



 Score = 34.7 bits (76), Expect = 0.040
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +2

Query: 80  PEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVI 214
           P   ++E L  D++DESLR++KE LLG      V   PD   K++
Sbjct: 49  PMIALKEQLERDKDDESLRRWKEQLLGVVDLEDVGETPDPVVKIL 93


>At1g12070.1 68414.m01393 Rho GDP-dissociation inhibitor family
           protein similar to SP|P52565 Rho GDP-dissociation
           inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
           contains Pfam profile PF02115: RHO protein GDP
           dissociation inhibitor
          Length = 223

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 23/68 (33%), Positives = 37/68 (54%)
 Frame = +1

Query: 301 FVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKTEIQSYTXP 480
           F +KEG +Y +   F V   IV GL+Y    ++ G+ V     M+G++ P+ E  ++   
Sbjct: 122 FTLKEGSKYTLIFTFRVTNNIVSGLQYSNTVWKTGIKVYSRKEMLGTFSPQAEPYTHVMF 181

Query: 481 PEDAPSGI 504
            E APSG+
Sbjct: 182 EETAPSGL 189



 Score = 35.5 bits (78), Expect = 0.023
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +2

Query: 80  PEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVI 214
           P   ++E L  D++DESLR++KE LLG      V   PD   K++
Sbjct: 49  PMIALKEQLEKDKDDESLRRWKEQLLGSVDLEEVGETPDPLVKIL 93


>At3g22380.1 68416.m02825 expressed protein
          Length = 1550

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 276 LDRPQKAGIRDKGGCTIPNKDRFYRSTRDRARSEVRAEDLQTGRS 410
           ++ P+ A +RD+GG    ++DR     R+R R   R  D    RS
Sbjct: 39  VELPEAARLRDRGGSNKKDRDRERDRDRERERERDRERDRLNSRS 83


>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -3

Query: 444 IGADHMSHLVNWNAQSVGLLHVLQTVHDLALNDKIDPYSVLYTLLYHEYLLFEVGQVPSE 265
           +G  +     N N  +VG L+ +   H  A+  K++ +  L  LL HE L   +  V SE
Sbjct: 199 VGEVYRKFSTNENTITVGGLYAID--HSTAVKAKLNNHGTLGALLQHEVLPRSLVTVSSE 256

Query: 264 I 262
           I
Sbjct: 257 I 257


>At1g06730.1 68414.m00715 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 488

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +2

Query: 56  IKSSYKPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALC 235
           +K+S     EK  E++LA + E   +    + ++   ++   ++E     KV+ + LA  
Sbjct: 418 MKASKLNDEEKFFEQLLAENSESSRINLLSKGMIKDGRSNKQLIETISMEKVVSELLAEL 477

Query: 236 VVGR 247
            +GR
Sbjct: 478 ELGR 481


>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
           protein similar to mavicyanin SP:P80728 from [Cucurbita
           pepo]
          Length = 310

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 293 FLRSVKSPVRSSSHHRAQP 237
           FL S+KS VRS  HH A+P
Sbjct: 92  FLSSMKSHVRSLHHHEARP 110


>At2g05170.1 68415.m00544 vacuolar protein sorting 11 family protein
           / VPS11 family protein similar to Vacuolar protein
           sorting 11 (hVPS11) (PP3476) (Swiss-Prot:Q9H270) [Homo
           sapiens]; similar to Vacuolar biogenesis protein END1
           (PEP5 protein) (Vacuolar protein sorting 11)
           (Swiss-Prot:P12868) [Saccharomyces cerevisiae]
          Length = 932

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 338 ILIRYCTPSFITNTCFLRSVKSPVRSSSHHRAQPHTML 225
           IL+R CT   I N  FL  + SPV   +     PH+++
Sbjct: 538 ILMRLCTEQGIPNGVFLSMLPSPVDFITVFVQHPHSLM 575


>At3g27910.1 68416.m03482 kelch repeat-containing protein contains
           Pfam profile PF01344: Kelch motif
          Length = 294

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +1

Query: 298 VFVIKEGVQYRIRIDFIVQREIVHGLKYVQKT-YRLGVPVDKMTHMVGSYPPKTEIQSYT 474
           VF  K+GV  R   DF++ R+ V G   +    Y  G    K  + V  Y P   + S+ 
Sbjct: 157 VFDPKKGVWER---DFLLDRDWVVGSCVIDNMLYTFGFDSVKRIYRVRVYDPSVRVWSFV 213

Query: 475 XPPEDAP 495
              ED P
Sbjct: 214 KGIEDIP 220


>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
          Length = 1007

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 453 FGGIGADHMSHLVNWNAQSVGLLHVLQTVHDLALNDKIDPYSVLY 319
           FG  G D  SH V+   +S+ +    +TV DL     +D  SV+Y
Sbjct: 236 FGREGLDEQSHSVSLADKSILIRSRPETVRDLFETGLLDGLSVVY 280


>At2g34357.1 68415.m04206 expressed protein
          Length = 1280

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 390 LLHVLQTVHDLALNDKIDPYSVLYTLLYH 304
           L+H+L TV  + +N+  D Y++L   + H
Sbjct: 142 LVHLLTTVESIMVNEGSDSYNILLNFVTH 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,945,540
Number of Sequences: 28952
Number of extensions: 242012
Number of successful extensions: 698
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)