Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0411
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    99   3e-22

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =   99 bits (238), Expect = 3e-22
 Identities = 43/69 (62%), Positives = 52/69 (75%)
 Frame = +3

Query: 9   ITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 188
           IT+          AG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P
Sbjct: 197 ITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMP 256

Query: 189 GFGIISHII 215
            FG++SHII
Sbjct: 257 AFGVVSHII 265



 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 41/68 (60%), Positives = 56/68 (82%), Gaps = 1/68 (1%)
 Frame = +2

Query: 308 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN-PNIL*RLGFVFLF 484
           HH+FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++   +L  +GF+ LF
Sbjct: 296 HHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILF 355

Query: 485 TVGGLTGV 508
           T+GGLTGV
Sbjct: 356 TIGGLTGV 363



 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 28/52 (53%), Positives = 34/52 (65%)
 Frame = +1

Query: 463 IRFCIFIHSRRINRCILANSSIDITLHDTYYVVAHFHYVLSIGAVLQLLGDY 618
           I F I      +   IL+NS +DI  HDTY+VVAHFHYVLS+GA+  L G Y
Sbjct: 349 IGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAY 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,739,917
Number of Sequences: 5004
Number of extensions: 29513
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)