Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0411
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                   83   2e-16
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12)              29   4.1  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 38/60 (63%), Positives = 50/60 (83%)
 Frame = +2

Query: 329 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGV 508
           +++DTRAYFT+AT+IIAVPTGIK+F  LAT++G  I  +  +L  +GFVFLFT+GGLTGV
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 25/37 (67%), Positives = 31/37 (83%)
 Frame = +1

Query: 508 ILANSSIDITLHDTYYVVAHFHYVLSIGAVLQLLGDY 618
           ILANSS+D+ +HDTYYVVAHFHYVLS+GAV  +   +
Sbjct: 61  ILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGF 97


>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 308 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL 457
           HH+ T+ I +         T+I   PT I +   +  +H T IN +P ++
Sbjct: 14  HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHPTVI 63


>SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12)
          Length = 182

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 124 GSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVISC 2
           G   P G K D  K R    ++IAP K   D ++   V++C
Sbjct: 77  GDAGPRGLKGDPGKIRDAPRVIIAPQKLNID-SSATVVLNC 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,125,753
Number of Sequences: 59808
Number of extensions: 197362
Number of successful extensions: 363
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)