Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0410
(748 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different... 36 0.001
AY263175-1|AAP78790.1| 814|Anopheles gambiae TmcA-like protein ... 28 0.35
AB090813-1|BAC57901.1| 724|Anopheles gambiae gag-like protein p... 27 0.47
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein. 27 0.81
AY578809-1|AAT07314.1| 358|Anopheles gambiae Sloan-Kettering In... 26 1.1
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein. 26 1.4
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein. 25 1.9
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein. 24 4.3
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript... 24 4.3
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein. 24 5.7
CR954256-10|CAJ14151.1| 548|Anopheles gambiae putative alkaline... 23 7.6
AY973196-1|AAY41590.1| 94|Anopheles gambiae defensin 4 protein. 23 7.6
AF042732-3|AAC18058.1| 496|Anopheles gambiae diphenol oxidase-A... 23 7.6
>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
differentiation regulator protein.
Length = 1283
Score = 35.9 bits (79), Expect = 0.001
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Frame = +1
Query: 460 QAYHQQARGSHQGHGAELDEEKR-RHAETIKILRKKERQLKE--VIIQCEEDQKNISLLQ 630
Q+ H++ + + A L EE+R R A I R+KER+L+E Q E++Q+ +
Sbjct: 435 QSIHERMKLEEEHRAARLREEERAREAREAAIEREKERELREQREREQREKEQRE-KEQR 493
Query: 631 DSLEKTSQKVSIYKRQLAEQEGMSQQSVTRVRRFQRELE 747
+ E+ Q+ +R+ ++E ++ R R +RE E
Sbjct: 494 EKEERERQQREKEQREREQREKEREREAARERERERERE 532
>AY263175-1|AAP78790.1| 814|Anopheles gambiae TmcA-like protein
protein.
Length = 814
Score = 27.9 bits (59), Expect = 0.35
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 111 YEQALRVKRSVEQQYEESQTRVNELTVINVNLSSSKAKIEQELAIV 248
YE L VKRS++ + +S R NE+TV+ +S I + L I+
Sbjct: 348 YEVILVVKRSMDIKESDSWWRRNEITVVMSLISFFFPMIFEALGII 393
>AB090813-1|BAC57901.1| 724|Anopheles gambiae gag-like protein
protein.
Length = 724
Score = 27.5 bits (58), Expect = 0.47
Identities = 24/127 (18%), Positives = 61/127 (48%)
Frame = +1
Query: 364 RQDRGRQEVS*NRSQEHLCPSGRSRSQRYCWWQAYHQQARGSHQGHGAELDEEKRRHAET 543
RQ R +Q+ + Q+ + + +RY Q Q+ + HQ + +++R+ +
Sbjct: 270 RQQRQQQQRP-RQQQQQQQQQQQQQGERYVPPQLRQQRQQQQHQ-QQQQQQQQQRQQQQR 327
Query: 544 IKILRKKERQLKEVIIQCEEDQKNISLLQDSLEKTSQKVSIYKRQLAEQEGMSQQSVTRV 723
+ ++++RQ ++ Q + Q+ Q ++ Q+ +++Q +Q+ +QS+
Sbjct: 328 QQQRQQQQRQQQQQQQQQQRQQQQRQQQQQQQQQHQQQQQQWQQQ-QQQQQQPRQSLPHR 386
Query: 724 RRFQREL 744
++ Q +L
Sbjct: 387 KQTQLQL 393
>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
Length = 1376
Score = 26.6 bits (56), Expect = 0.81
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +2
Query: 290 DERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRLEEVEANAIVGGKRI 469
DE Y ++ E + + EE ++ ++ + K+S E +KN + +V+AN +R
Sbjct: 340 DETYDALKAERVEKEKLVKEEIKQYDELVSAKESKESTLKNSLDKFAKVQANMRATNERR 399
Query: 470 ISKLE 484
LE
Sbjct: 400 KKTLE 404
>AY578809-1|AAT07314.1| 358|Anopheles gambiae Sloan-Kettering
Institute proto-oncogeneproduct protein.
Length = 358
Score = 26.2 bits (55), Expect = 1.1
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +1
Query: 406 QEHLCPSGRSRSQRYCWWQAYHQQARGSHQGHGAELDEEKRRHAETIKILRKKERQLKE 582
Q+ +C + R C W ++ S+ H AE ++ + HA+ + + KER++++
Sbjct: 267 QKFVCHQHEPQEIRTCHW-GFNSSNWRSYI-HVAESEKNREEHAQVLDKIWLKEREIEQ 323
>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
Length = 1201
Score = 25.8 bits (54), Expect = 1.4
Identities = 10/50 (20%), Positives = 30/50 (60%)
Frame = +3
Query: 9 DEVQRQLQVTLDQYGVAQRRIQSLTGEVEEIRGNYEQALRVKRSVEQQYE 158
++ +RQL ++ ++RI+ + + EE+ +AL+ +++++++ E
Sbjct: 853 EDRKRQLTNCRNEVVATEKRIKKVLTDTEEVDRKLSEALKQQKTLQKELE 902
>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
Length = 1229
Score = 25.4 bits (53), Expect = 1.9
Identities = 18/116 (15%), Positives = 45/116 (38%)
Frame = +2
Query: 161 ISDSRQRADCYQREPVKQQGXXXXXXXXXXXXXXEITKELRIADERYQRVQTELKHTVEH 340
I ++ AD +E K+ G E+ E+ + + + ++ HT +
Sbjct: 262 IEKRKEEADEVLKEKKKEVGKMTREMAKKEQEIREVEAEMSKRHPMFIKAKEKVAHTQKK 321
Query: 341 LHEEQERIVKIEAVKKSLEIEVKNISVRLEEVEANAIVGGKRIISKLEARIKDMEL 508
L + + + ++ + ++K + L+EVE + + + R ++ L
Sbjct: 322 LDGALKTLEQARRADEAHQADIKKLVDELQEVEVKRAAFENEVAGESKKRGSNVHL 377
>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
Length = 1133
Score = 24.2 bits (50), Expect = 4.3
Identities = 11/52 (21%), Positives = 28/52 (53%)
Frame = +3
Query: 6 RDEVQRQLQVTLDQYGVAQRRIQSLTGEVEEIRGNYEQALRVKRSVEQQYEE 161
R+++QR+L Y R+Q +T ++ + + + ++ + + EQQ ++
Sbjct: 718 REQLQRELNELNSAYAKEDERLQEMTRKLHQRQQHMKKLQQELLTNEQQLQQ 769
>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 24.2 bits (50), Expect = 4.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 82 VSDCILRWATPYWSRVTCN 26
V D ILR+A P W T N
Sbjct: 803 VVDSILRYAAPVWHEATKN 821
>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
Length = 1036
Score = 23.8 bits (49), Expect = 5.7
Identities = 17/79 (21%), Positives = 34/79 (43%)
Frame = +1
Query: 505 AELDEEKRRHAETIKILRKKERQLKEVIIQCEEDQKNISLLQDSLEKTSQKVSIYKRQLA 684
AEL E+KR E + ++ + ++K +C+E + + + K + QL
Sbjct: 650 AELREQKRDLQEQLSKYQQTKMKVKRQEQKCKELTARLVNVDEEKVKFERSCRTIIEQLL 709
Query: 685 EQEGMSQQSVTRVRRFQRE 741
+Q+ ++ R RE
Sbjct: 710 DQQRRKVAALERYAAASRE 728
Score = 23.4 bits (48), Expect = 7.6
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Frame = +1
Query: 511 LDEEKRRHAETIKILR-KKERQLKEVIIQCEEDQKN-----ISLLQDSLEKTSQKVSIYK 672
LD+++R+ A + +E L E I+ E++ N LL+D+ + + ++ +
Sbjct: 709 LDQQRRKVAALERYAAASREHDLLEQRIRLFEERNNDREANFRLLEDAYQSAKKTLANVE 768
Query: 673 RQLAEQEGMSQQSVTRVR 726
++LAE + S + R
Sbjct: 769 KKLAEVKAKSSDKNSTAR 786
>CR954256-10|CAJ14151.1| 548|Anopheles gambiae putative alkaline
phosphatase protein.
Length = 548
Score = 23.4 bits (48), Expect = 7.6
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 457 WQAYHQQARGSHQGHGAELDEEKRRHAETIKIL 555
WQ +H R ++ + +L E H ET +L
Sbjct: 299 WQHHHSHHRSAYVQNRVQLLETNTAHGETDYLL 331
>AY973196-1|AAY41590.1| 94|Anopheles gambiae defensin 4 protein.
Length = 94
Score = 23.4 bits (48), Expect = 7.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 713 TLCCDMPSCSANC 675
TL C P+CSA C
Sbjct: 62 TLTCTNPTCSAQC 74
>AF042732-3|AAC18058.1| 496|Anopheles gambiae diphenol oxidase-A2
protein.
Length = 496
Score = 23.4 bits (48), Expect = 7.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 272 KELRIADERYQRVQTELKHTVEHLHEEQE 358
KEL A+ER +R Q +L+ E E+ +
Sbjct: 466 KELESAEERREREQQDLELAKEMAEEDDD 494
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,526
Number of Sequences: 2352
Number of extensions: 12105
Number of successful extensions: 48
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76923555
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -