Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0410
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.75 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.75 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   7.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   7.0  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   9.3  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   9.3  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   9.3  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   9.3  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   9.3  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 585 HHSVRGGSEEHLSPPRF 635
           H S +  SEEHL+P RF
Sbjct: 393 HPSTQEDSEEHLTPKRF 409


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 585 HHSVRGGSEEHLSPPRF 635
           H S +  SEEHL+P RF
Sbjct: 393 HPSTQEDSEEHLTPKRF 409


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 582 GHHSVRGGSEEHLSPPRF 635
           GHH    GS++ +  PRF
Sbjct: 63  GHHYGAAGSQQDMPYPRF 80


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 420 TEMFLTSISRDFLT 379
           TE FLT+ S DFLT
Sbjct: 199 TEGFLTTCSFDFLT 212


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 420 TEMFLTSISRDFLT 379
           TE FLT+ S DFLT
Sbjct: 199 TEGFLTTCSFDFLT 212


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 272 KELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIE 403
           +E R  D RY+++  E +  +E     +      E  KKS + E
Sbjct: 10  REYREKDRRYEKLHNEKEKLLEERTSRKRYSRSREREKKSYKNE 53


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 272 KELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIE 403
           +E R  D RY+++  E +  +E     +      E  KKS + E
Sbjct: 10  REYREKDRRYEKLHNEKEKLLEERTSRKRYSRSREREKKSYKNE 53


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 272 KELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIE 403
           +E R  D RY+++  E +  +E     +      E  KKS + E
Sbjct: 10  REYREKDRRYEKLHNEKEKLLEERTSRKRYSRSREREKKSYKNE 53


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 272 KELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIE 403
           +E R  D RY+++  E +  +E     +      E  KKS + E
Sbjct: 10  REYREKDRRYEKLHNEKEKLLEERTSRKRYSRSREREKKSYKNE 53


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 272 KELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIE 403
           +E R  D RY+++  E +  +E     +      E  KKS + E
Sbjct: 243 REYREKDRRYEKLHNEKEKLLEERTSRKRYSRSREREKKSYKNE 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,161
Number of Sequences: 438
Number of extensions: 3647
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)