Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0408
         (755 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.1  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.0  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   3.5  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    22   4.6  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    22   4.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 271 DIVTLGSNQH*VRSSQTLAPVQGLPS 194
           DI  LG  +H  ++   L P QG PS
Sbjct: 236 DIKVLGYQRHSKQNVALLCPAQGFPS 261



 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 58  YRSYENY-KVYNVVPTSEIHIQTLG 129
           Y    NY   Y V+P+ E+HI+ +G
Sbjct: 167 YNHTANYDSKYLVLPSGELHIRDVG 191


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -2

Query: 130 HRAFVCEFLT*ALHCKLCSFHSFCTLSLL 44
           H  F C F+   +H  LC+++ +    +L
Sbjct: 82  HLLFYCPFIIFTVHFLLCTYYFYYAFIIL 110


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 587 EFLTSDDPDV--RFLAETFIWHIVPVTNPDGYTYTFSEDRMWRKNRNPVNYV 736
           E+  SD  DV  RFLA       V ++ P+      S +R W +   PV+Y+
Sbjct: 35  EWKWSDIADVCERFLAPKGFGG-VQISPPNENLVVTSSNRPWWERYQPVSYI 85


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 64  SYENYKVYNVVPTSEIHIQTLGDLKKAGYDFWTDILTIGG 183
           ++ +  VY++V  SEIH             F   +LTI G
Sbjct: 197 TWTSLSVYHLVEISEIHFDLCQAADDLNRYFEVQVLTIFG 236


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 64  SYENYKVYNVVPTSEIHIQTLGDLKKAGYDFWTDILTIGG 183
           ++ +  VY++V  SEIH             F   +LTI G
Sbjct: 193 TWTSLSVYHLVEISEIHFDLCQAADDLNRYFEVQVLTIFG 232


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,586
Number of Sequences: 336
Number of extensions: 4164
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)