Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0408
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    76   5e-15
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    30   0.41 
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    27   2.9  
SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit Mrp2...    25   8.8  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   8.8  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 76.2 bits (179), Expect = 5e-15
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
 Frame = +2

Query: 521 MIEGGIHSREWISPATVTWIIKEFLTSDDPD--VRFLAETFIWHIVPVTNPDGYTYTFSE 694
           +I+GG H+REWI   +V +   + L   D D  VR L + F W  +PV N DGY YT+S 
Sbjct: 242 IIQGGSHAREWIGIPSVCYAAWQLLAKYDSDGHVRKLLDKFEWIFIPVLNVDGYEYTWSN 301

Query: 695 DRMWRKNRNPVNYVPC 742
           DR+W KNR P+N   C
Sbjct: 302 DRLWSKNRQPLNNSEC 317



 Score = 31.5 bits (68), Expect = 0.13
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 357 YYSLAQIHSWLDELVTLYPGVVTTMVIGTSFEGRELKGIVID 482
           Y +L  I+SWL  + +LY  +   + +G + EGR + G+ ++
Sbjct: 183 YQNLESINSWLRLMASLYKDLSELVPVGITAEGRTILGLKLN 224


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +3

Query: 252 EPNVTISNVQALINSQLQP-ATNARSSTLGSFSWDRYYSLAQIHSWLDELVTLYPGVVTT 428
           E  +T  N   +++SQLQP AT +RSS L SFS   + S   + S   + +    G  T+
Sbjct: 453 ENAITKDNDDIILSSQLQPTATGSRSSRL-SFSRHGHGSQTSLGSIKRKSIMERMGRPTS 511

Query: 429 MVIGTSF 449
             +G+SF
Sbjct: 512 PFMGSSF 518


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 216 ARVCELRT*CWFEPNVTISNVQALINS 296
           A VC L   C+ +PN  IS V+ L++S
Sbjct: 600 AAVCALGFICFKDPNALISTVELLVDS 626


>SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit
           Mrp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 667 RICDRNNVPDKGLGQESHIRIIARQELFDDPSDSRRR 557
           RIC RNNVP          R+   Q  ++ PS+ R R
Sbjct: 66  RICQRNNVP----------RLFRSQRFYEKPSEKRSR 92


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 215 SCSGATITLAFPPIVRISVQKSYPAFLRSPSVCM*IS 105
           S SG  +TLA     R S+ + Y  F+R   +CM IS
Sbjct: 785 SISGDLVTLAVE--CRSSITRVYKEFIRLSKLCMRIS 819


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,170,402
Number of Sequences: 5004
Number of extensions: 66715
Number of successful extensions: 176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)