Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0408
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0653 + 30891231-30891276,30891624-30892898,30893775-30893878 32 0.43
11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910 30 2.3
02_05_1357 + 35899480-35899578,35900247-35900334,35900438-359005... 29 3.0
12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539... 29 5.3
05_05_0026 + 21645845-21647404 28 7.0
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 28 7.0
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235... 28 9.2
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 28 9.2
>01_06_0653 + 30891231-30891276,30891624-30892898,30893775-30893878
Length = 474
Score = 32.3 bits (70), Expect = 0.43
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Frame = -2
Query: 697 ILRECVRVSIRICDRNNVPDKGLGQESHIRIIARQEL-----FDDPSDSRRRYPFTGVNT 533
++ C+ + IC N D + +++I +Q L +D D + + TGV
Sbjct: 14 LVGHCLGGKVGICYGRNADDLP-APDKVVQLIQQQSLKYVRIYDTNIDVIKAFANTGVEL 72
Query: 532 SLNHPNQRLLPLSPFLKSITMPLSSRPSNDVPMTMVV-TTPGYRVTSS 392
+ PN LLP + + ++ L + P TM+ T G VT S
Sbjct: 73 MVGVPNSDLLPFAQYQSNVDTWLKNSILPYYPATMITYITVGAEVTES 120
>11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910
Length = 1155
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +3
Query: 327 STLGSFSWDRYYSLAQIHSWLDELVTL 407
S+L S + +R+Y+ AQ+ +WL +LV+L
Sbjct: 1019 SSLESLTLERWYNQAQLPNWLGQLVSL 1045
>02_05_1357 +
35899480-35899578,35900247-35900334,35900438-35900592,
35900652-35900715,35902910-35902974,35903061-35903126,
35903644-35903745
Length = 212
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 354 RYYSLAQIHSWLDELVTLYPGVVTTMVIGTSFEGRELKGIVID 482
R SL +H W+ EL PG V +++GT + R+ K +D
Sbjct: 105 RPLSLLSLHEWIPELRHYAPG-VPIILVGTKLDLRDDKQFFVD 146
>12_02_0870 -
23852923-23853228,23853416-23853728,23853813-23853938,
23854038-23854243,23854311-23854443,23854607-23854688,
23854785-23854914,23855034-23855126,23855211-23855333,
23855786-23855977,23858230-23858394,23858697-23858768,
23858826-23858945,23859873-23859949,23860032-23860398,
23860738-23861871
Length = 1212
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -2
Query: 658 DRNNVPDKGLGQESHIRIIARQELFDDPSDSRRRYPFTGVNTSLNHPNQRLLPLSPFLKS 479
++ ++P+ G ++SH+ + E+ D PSDSR F + + L L
Sbjct: 318 NKTSIPN-GQHEDSHVHNNQKYEIVDVPSDSRPLLVFINKRSGAQCGDSLRQRLQILLNP 376
Query: 478 I-TMPLSSRPSNDVPMTMVVTTPGYRV 401
I L + +V +T+ P +RV
Sbjct: 377 IQVFELGKQQGPEVGLTLFRKVPHFRV 403
>05_05_0026 + 21645845-21647404
Length = 519
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 276 VQALINSQLQPATNARSSTLGSFSWDRYYSLAQIHSWLDELVTLYPGV 419
V A I ++ R T SF +D+ + +H+ L E + L+P V
Sbjct: 337 VAAAIRDEVFRVAGGRDPTAASFDFDKLKDMHYVHAALYESMRLFPPV 384
>01_06_0823 + 32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 547 TGVNTSLNHPNQRLLPLSPFLKSITMPLSSRPSNDVPMT 431
T N S +H + R++P S F + PL PS+ P+T
Sbjct: 912 TTPNPSFSHASPRMMPGSSFRMNPPAPLPFIPSSVTPLT 950
>06_01_0324 -
2357432-2357724,2358042-2358105,2358321-2358404,
2358638-2358715,2359298-2359360,2359459-2359561,
2359675-2359800,2360212-2360258,2361284-2361388,
2361483-2361605,2361759-2361854,2362052-2362141,
2362759-2362815,2362899-2363028,2363613-2363708,
2363815-2363875,2364391-2364490
Length = 571
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Frame = +2
Query: 521 MIEGGIHSREWISPATV----TWIIKEFLTSDDPDVRFLAETFIWHIVPVTNPDGY 676
M G +H E + + W+ +L DP + + HI+P NPDG+
Sbjct: 178 MYVGNVHGDEPVGREVLIKLANWLCDNYLK--DPLATLIVKNMHLHILPTMNPDGF 231
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = -2
Query: 670 IRICDRNNVPDKGLGQESHIRIIARQELFDDPSDSRRRYPFTGVNTSLNHPNQRL 506
I++C ++ G SH+ ++ + +D +S YP T + + H N+ L
Sbjct: 1647 IQVCVASSKMCWGRSLPSHLVVVMGTQYYDGRGNSHTDYPVTDLLQMMGHANRPL 1701
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,457,147
Number of Sequences: 37544
Number of extensions: 432200
Number of successful extensions: 931
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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