Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0408
(755 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15763| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 1e-12
SB_24088| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_37943| Best HMM Match : Peptidase_M14 (HMM E-Value=0) 65 7e-11
SB_34368| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 2e-07
SB_49100| Best HMM Match : Peptidase_M14 (HMM E-Value=0) 53 2e-07
SB_62| Best HMM Match : Peptidase_M14 (HMM E-Value=2.7e-34) 42 4e-04
SB_11736| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_42097| Best HMM Match : DUF1605 (HMM E-Value=3e-15) 32 0.58
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24) 31 0.76
SB_28364| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_43440| Best HMM Match : PADR1 (HMM E-Value=0.45) 31 1.3
SB_39935| Best HMM Match : Peptidase_M14 (HMM E-Value=1.4e-15) 30 1.8
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042) 30 2.3
SB_50810| Best HMM Match : DUF1452 (HMM E-Value=4.9) 30 2.3
SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0) 29 3.1
SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0) 29 4.1
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17) 29 5.4
SB_56315| Best HMM Match : Collagen (HMM E-Value=0.00013) 28 7.1
SB_56074| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_10963| Best HMM Match : DED (HMM E-Value=7.1e-12) 28 9.4
SB_8182| Best HMM Match : ATP-synt_E (HMM E-Value=1.8) 28 9.4
SB_1170| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_15763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 70.9 bits (166), Expect = 1e-12
Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Frame = +2
Query: 533 GIHSREWISPATVTWIIKEFLTS--DDPDVRFLAETFIWHIVPVTNPDGYTYTFSEDRMW 706
GIH+REWI+PAT +II +F+T D V + + + I+PV N DGY YT++ +RMW
Sbjct: 145 GIHAREWITPATCMYIITQFITKYRSDKSVTEVLDKMDFIIMPVLNADGYVYTWTGNRMW 204
Query: 707 RKNRNP 724
RK R P
Sbjct: 205 RKTRKP 210
>SB_24088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 69.3 bits (162), Expect = 3e-12
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +2
Query: 491 RRKRQQPLIGMIEGGIHSREWISPATVTWIIKEFLT--SDDPDVRFLAETFIWHIVPVTN 664
+R R +P+ M GIH+REW+SPAT +I K+ L+ D +V + + + I+PV N
Sbjct: 4 KRARNKPVFFM-NCGIHAREWVSPATCMYIAKQLLSRYGKDANVTSVLDKMDFVIMPVLN 62
Query: 665 PDGYTYTFSEDRMWRKNRNP 724
PDGY +T+ R WRK P
Sbjct: 63 PDGYVFTWERQRFWRKTLKP 82
>SB_37943| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
Length = 249
Score = 64.9 bits (151), Expect = 7e-11
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Frame = +2
Query: 497 KRQQPLIGMIEGGIHSREWISPATVTWIIKEFLTSDDPD--VRFLAETFIWHIVPVTNPD 670
K +P+ + GIH+REW+SPAT +II E ++ + D V + + + I P+ NPD
Sbjct: 66 KADKPVF-FVNCGIHAREWVSPATCMYIIHELVSKYEKDAKVTSVLDKMDFIIHPMVNPD 124
Query: 671 GYTYTFSED--RMWRKNRNPVNYVPC 742
GY +T + R+WRK+R P + C
Sbjct: 125 GYVFTHKNESNRLWRKSRKPTSKAGC 150
>SB_34368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 53.6 bits (123), Expect = 2e-07
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Frame = +2
Query: 533 GIHSREWISPATVTWIIKEFLT--SDDPDVRFLAETFIWHIVPVTNPDGYTYTFSE 694
GIH+REWISPAT + I + +T D + + + + I+PV NPDGY YT+++
Sbjct: 486 GIHAREWISPATCMYAIDQMVTKYGKDSGITSMLDKMDFVILPVVNPDGYEYTWTK 541
Score = 37.9 bits (84), Expect = 0.009
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 70 ENYKVYNVVPTSEIHIQTLGDLKKAG-YDFWTDILTIGGNARVMVAPEQEQEFVSYALS 243
E+ KV V+P + H++ + DL+ +DFWT + +G +M+ PE++ VS +S
Sbjct: 19 ESDKVIRVIPKNHEHMRVIRDLESTDKFDFWTHVSHVGKPVDIMI-PEKDFNTVSRQMS 76
>SB_49100| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
Length = 313
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +2
Query: 581 IKEFLTSD-DPDVRFLAETFIWHIVPVTNPDGYTYTFSEDRMWRKNRNP 724
IK T D D DV + + + W I+PV N DGY YT ++DRMWRK R P
Sbjct: 92 IKILETGDSDSDVTDMLDNYEWVILPVLNVDGYEYTRTKDRMWRKTRTP 140
Score = 33.9 bits (74), Expect = 0.14
Identities = 23/68 (33%), Positives = 34/68 (50%)
Frame = +3
Query: 276 VQALINSQLQPATNARSSTLGSFSWDRYYSLAQIHSWLDELVTLYPGVVTTMVIGTSFEG 455
VQ + Q +ARS G F D Y+SL++IH+ + L Y V + +G S+E
Sbjct: 31 VQDFSSMLAQEKVSARS---GGFDSD-YHSLSEIHAEILALAKAYSSVASNFSLGKSYEN 86
Query: 456 RELKGIVI 479
R+ I I
Sbjct: 87 RDQLAIKI 94
>SB_62| Best HMM Match : Peptidase_M14 (HMM E-Value=2.7e-34)
Length = 235
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +2
Query: 605 DPDVRFLAETFIWHIVPVTNPDGYTYTFSEDRMWRKNRNP 724
D V + + + I+P+ N DGY YT + +RMWRK R P
Sbjct: 8 DQTVTAMLDKMDFVIMPILNVDGYVYTHTHNRMWRKTRKP 47
>SB_11736| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/37 (48%), Positives = 27/37 (72%), Gaps = 3/37 (8%)
Frame = +2
Query: 572 TWIIK---EFLTSDDPDVRFLAETFIWHIVPVTNPDG 673
+W++K +FLTS+ D + L +TFI+ IVP+ NPDG
Sbjct: 263 SWMMKGLLDFLTSNSADAKLLRDTFIFKIVPMINPDG 299
>SB_42097| Best HMM Match : DUF1605 (HMM E-Value=3e-15)
Length = 889
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 494 RKRQQPL--IGMIEGGIHSREWISPATVTWIIKEFLTSDDPDVRFLAETFIWHIVPVTNP 667
R R +P + + +H E S + L +DDP L + +I+ ++P+ NP
Sbjct: 343 RIRDRPTFEVFFLSARVHPGETPSSFVFEGFLDFLLRTDDPRAAALRDQYIFKMIPMLNP 402
Query: 668 DG 673
DG
Sbjct: 403 DG 404
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = -2
Query: 541 VNTSLNHPNQRLLPLSPFLKSITMPLSSRPSNDVPMTMVVTTPGYRVTSSSNHE 380
+NT ++ ++ ++ + S+T ++ RPS + P V T+PG+ +SN +
Sbjct: 1499 LNTDMDRSQAFVMGVTDKVASLTTVVNDRPSIEEPQKEVDTSPGFEPEQASNDQ 1552
>SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)
Length = 201
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -2
Query: 493 PFLKSITMPLSSRPSNDVPMTMVVTTPGYR 404
P+ ++ MP+S RP VP+T+V PGY+
Sbjct: 125 PYTETFMMPMS-RPEYHVPLTLVPQNPGYQ 153
>SB_28364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 252 EPNVTISN-VQALINSQLQPATNARSSTLGSFSWDRYYSLAQIHSWLD 392
EP + I VQ L+++QLQPA N LG+ + + W D
Sbjct: 42 EPTIQIGRYVQRLLDNQLQPANNHNDRVLGNIRVANFAGFFEKKKWHD 89
>SB_43440| Best HMM Match : PADR1 (HMM E-Value=0.45)
Length = 942
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -3
Query: 288 LALEHSILSH*VQTNTKCVAHKLLLLFRGY---HHSCVSTDREDIG 160
L ++H +L KC LLF+GY HH C S DR D G
Sbjct: 887 LTVDH-VLGMIADAKKKCTVCGTQLLFQGYTKSHHHCFSIDRLDDG 931
>SB_39935| Best HMM Match : Peptidase_M14 (HMM E-Value=1.4e-15)
Length = 364
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 587 EFLTSDDPDVRFLAETFIWHIVPVTNPDG 673
+F+ S+ P + L E ++ ++P+ NPDG
Sbjct: 127 DFIISNHPVAKVLREYLVFKVIPMLNPDG 155
>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
Length = 4607
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 261 VTISNVQALINSQLQPATNARSSTLGSFSWDRYYSLAQIHSWLDELVTLY 410
+T SN+ A ++ +L+ + +S L SF ++ S WLDE +L+
Sbjct: 2718 MTHSNIHADLSKELEGLVDVQSEKLSSFKSEKQLSKRIKQFWLDEHKSLF 2767
>SB_50810| Best HMM Match : DUF1452 (HMM E-Value=4.9)
Length = 214
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2
Query: 547 TGVNTSLNHPNQR--LLPLSPFLKSITMPLSSRPSNDVPMTMVVTTPGYRVTS 395
+G + S +H N R SP S T+PLSS S+ + +TTP +T+
Sbjct: 7 SGADKSRDHLNHRHTSTTTSPLSSSSTLPLSSISSSSSSLLSTITTPYSIITT 59
>SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
Length = 441
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 530 GGIHSREWISPATVTWIIKEFLTS--DDPDVRFLAETFIWHIVPVTNPDGY 676
G +H E +S + +I L + ++ +++ L ++ HI+P NPDGY
Sbjct: 91 GNMHGNEVVSREILLQLIGYLLKNYQENSELKKLVDSTRIHIMPSMNPDGY 141
>SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
Length = 1258
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 605 DPDVRFLAETFIWHIVPVTNPDGYTYTFSEDRMWRKN 715
D +V +T H++P NPDGY F D RKN
Sbjct: 718 DDEVTKALDTTRVHLLPSMNPDGYELAFKGDN--RKN 752
>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
Length = 1775
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 536 IHSREWI-SPATVTWIIKEFLTSDDPDVRFLAETFIWHIVPVTNPDGYTY 682
I S++W P T TW E + P + T WH PVT +G+T+
Sbjct: 10 IASQQWEWDPYTRTWHKAELIPPQWPGAQGQLRTVTWHGSPVTR-NGWTW 58
>SB_56315| Best HMM Match : Collagen (HMM E-Value=0.00013)
Length = 898
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 387 LDELVTLYPGVVTTMVIGTSFEGRELKGIVIDFK 488
+D VTL G ++ G F G +KG VID K
Sbjct: 357 IDPNVTLTMGTISIQTAGWGFRGDSIKGGVIDGK 390
>SB_56074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +2
Query: 266 NIECSSANQLPTTTCDKRTLQHSGFLQLGQIL*SSSNSLMVR*AGHSVSWGRHYHGH 436
N +CS A T C + T+ + + ++N++ R GH YHGH
Sbjct: 222 NTKCSRATMATNTKCSRATMATNTKYSRATM---ATNTVFARYHGHQYKVFARYHGH 275
>SB_10963| Best HMM Match : DED (HMM E-Value=7.1e-12)
Length = 349
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 106 EIHIQTLGDLKKAGYDFWTDILTIGGNARVMVAPEQEQEFVSYALSVGLN 255
+IH+ +LKK + W DIL GN R+ ++E + G+N
Sbjct: 290 DIHVTLASELKKRNSELW-DILLKFGNRRITHELKREPATPRITFTSGMN 338
>SB_8182| Best HMM Match : ATP-synt_E (HMM E-Value=1.8)
Length = 520
Score = 27.9 bits (59), Expect = 9.4
Identities = 23/84 (27%), Positives = 38/84 (45%)
Frame = -2
Query: 754 ISSSARNIIHRIPVLSPHTILRECVRVSIRICDRNNVPDKGLGQESHIRIIARQELFDDP 575
I+ NI+ + + ILR + I C +NN+P +GL ++S A +D
Sbjct: 339 INLQLNNIVQQ-QIARNREILRSLFKTII-FCGKNNIPLRGL-RDSDPTNAALAATLEDI 395
Query: 574 SDSRRRYPFTGVNTSLNHPNQRLL 503
S +R ++ T N + Q LL
Sbjct: 396 SMNRHKHENTNWNPTSRQDAQSLL 419
>SB_1170| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 614 VRFLAETFIWHIVPVTNPDGY 676
VR L +T HI+P NPDGY
Sbjct: 151 VRTLVDTTRIHILPSINPDGY 171
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,852,121
Number of Sequences: 59808
Number of extensions: 502052
Number of successful extensions: 1237
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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