Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0408
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    25   1.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   4.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   4.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.1  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   9.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +2

Query: 491 RRKRQQPLIGMIEGGIHSREWISPATVTWIIKEFLTSDDPDVRFLAETFIWHIVPVTNPD 670
           R  +    + ++ GG  +  W+ P  + ++   F+  + PD+   A T++  I    NP 
Sbjct: 300 RETKTAGTLAVVVGGFVAC-WL-PFFILYLATPFVPVEPPDILMPALTWLGWINSAINPF 357

Query: 671 GYTYTFSEDRM--WR 709
            Y +  ++ R+  WR
Sbjct: 358 IYAFYSADFRLAFWR 372


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = -3

Query: 684 VYVYPSGFVTGTMCQIKVSAKNLTSGSSLVKNSLMIQVTVAGDIH 550
           V++Y  GF++GT      +A  + + S+++  S+  +V   G ++
Sbjct: 162 VWIYGGGFMSGTATLDVYNADIMAATSNVIIASMQYRVGAFGFLY 206


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = -3

Query: 684 VYVYPSGFVTGTMCQIKVSAKNLTSGSSLVKNSLMIQVTVAGDIH 550
           V++Y  GF++GT      +A  + + S+++  S+  +V   G ++
Sbjct: 162 VWIYGGGFMSGTATLDVYNADIMAATSNVIIASMQYRVGAFGFLY 206


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 587 EFLTSDDPDVRFLAETFIW-HIVPV 658
           +FLT D+    F+   FIW +++P+
Sbjct: 209 DFLTDDEDTKVFVTCIFIWAYVIPL 233


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 587 EFLTSDDPDVRFLAETFIW-HIVPV 658
           +FLT D+    F+   FIW +++P+
Sbjct: 209 DFLTDDEDTKVFVTCIFIWAYVIPL 233


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 200 TITLAFPPIVRISVQKSYPAF 138
           +  + FPP+V    ++S+PA+
Sbjct: 193 SFVICFPPLVGWKDKRSHPAY 213


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 669 MDTRTHSRRIVCGERTGI 722
           + TR H+ + VC   TGI
Sbjct: 22  LKTRLHTEQSVCKTETGI 39


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 85  YNVVPTSEIHIQTLG 129
           Y V+P+ E+HI+ +G
Sbjct: 157 YLVLPSGELHIRDVG 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,858
Number of Sequences: 438
Number of extensions: 4860
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)