Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0408
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42230.2 68415.m05226 tubulin-specific chaperone C-related we...    33   0.27 
At2g42230.1 68415.m05227 tubulin-specific chaperone C-related we...    33   0.27 
At1g66090.1 68414.m07501 disease resistance protein (TIR-NBS cla...    30   1.4  
At5g22630.1 68418.m02644 prephenate dehydratase family protein c...    29   2.5  
At4g30780.1 68417.m04361 expressed protein hypothetical protein ...    28   7.7  
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ...    28   7.7  
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ...    28   7.7  
At1g71696.2 68414.m08283 carboxypeptidase D, putative similar to...    28   7.7  
At1g71696.1 68414.m08284 carboxypeptidase D, putative similar to...    28   7.7  

>At2g42230.2 68415.m05226 tubulin-specific chaperone C-related weak
           similarity to Tubulin-specific chaperone C
           (Tubulin-folding cofactor C) (CFC) (Swiss-Prot:Q15814)
           [Homo sapiens]
          Length = 568

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 226 QTLAPV-QGLPSLLRFHRS*GYRSKNHIRLS*DHRAFVCEFLT*ALHCK 83
           QTLAP+ Q L SL   HR       + + +S DH   V E L+  LHC+
Sbjct: 48  QTLAPIKQKLASLATNHRVGSAAISDALSISDDHARLVLETLSSVLHCE 96


>At2g42230.1 68415.m05227 tubulin-specific chaperone C-related weak
           similarity to Tubulin-specific chaperone C
           (Tubulin-folding cofactor C) (CFC) (Swiss-Prot:Q15814)
           [Homo sapiens]
          Length = 562

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 226 QTLAPV-QGLPSLLRFHRS*GYRSKNHIRLS*DHRAFVCEFLT*ALHCK 83
           QTLAP+ Q L SL   HR       + + +S DH   V E L+  LHC+
Sbjct: 48  QTLAPIKQKLASLATNHRVGSAAISDALSISDDHARLVLETLSSVLHCE 96


>At1g66090.1 68414.m07501 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 429

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +2

Query: 557 SPATVTWIIKEFLTSDDPDVRFLAETFIWHIVPVTNPDGYTYTFSEDRMWR 709
           SP+  TW    F +   PDVR    TF+ H+    N +G T  F + RM R
Sbjct: 18  SPSPCTWRYMTFTSFHGPDVR---NTFLSHLRKQFNTNGIT-MFDDQRMER 64


>At5g22630.1 68418.m02644 prephenate dehydratase family protein
           contains Pfam profile PF00800: prephenate dehydratase
          Length = 425

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 23/83 (27%), Positives = 35/83 (42%)
 Frame = +1

Query: 1   STMLFKTLIFFCFAGASLAYRSYENYKVYNVVPTSEIHIQTLGDLKKAGYDFWTDILTIG 180
           +++LFK L  F F   SL     E+    N  P   +  + +G  K   Y F+ D     
Sbjct: 329 TSVLFKVLSAFAFRNISLT--KIESRPHQNC-PVRVVGDENVGTSKHFEYTFYVDFEASM 385

Query: 181 GNARVMVAPEQEQEFVSYALSVG 249
             AR   A  + QE+ S+   +G
Sbjct: 386 AEARAQNALAEVQEYTSFLRVLG 408


>At4g30780.1 68417.m04361 expressed protein hypothetical protein
           F27D4.1 -  Arabidopsis thaliana,PID:g4115371
          Length = 589

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 601 ARQELFDDPSDSRRRYPFTGVNTS 530
           ARQ +F+DPS+S + +PF  +N S
Sbjct: 289 ARQSIFEDPSES-KGHPFGNLNLS 311


>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
            similar to transcriptional activator HBRM [Homo sapiens]
            GI:414117; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain; identical to cDNA putative chromatin
            remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3529

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 577  PSDSRRRYPFTGVNTSLNHPNQRLLPLSPFLKSITMPLSSRP 452
            PS+ R      GV T+   P+   LP+S      T+P+SS+P
Sbjct: 1708 PSEGRTYTALQGVTTA---PSDATLPMSSQPSDATLPMSSQP 1746


>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
            similar to transcriptional activator HBRM [Homo sapiens]
            GI:414117; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain; identical to cDNA putative chromatin
            remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3574

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 577  PSDSRRRYPFTGVNTSLNHPNQRLLPLSPFLKSITMPLSSRP 452
            PS+ R      GV T+   P+   LP+S      T+P+SS+P
Sbjct: 1708 PSEGRTYTALQGVTTA---PSDATLPMSSQPSDATLPMSSQP 1746


>At1g71696.2 68414.m08283 carboxypeptidase D, putative similar to
           carboxypeptidase D [Anas platyrhynchos]
           gi|2789654|gb|AAB96915
          Length = 491

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 575 WIIKEFLTSDDPDVRFLAETFIWHIVPVTNPDGYT 679
           WI   +    DP  + + E    HI+P  NPDG++
Sbjct: 141 WICDNY--KKDPLAQMIVENVHLHIMPSLNPDGFS 173


>At1g71696.1 68414.m08284 carboxypeptidase D, putative similar to
           carboxypeptidase D [Anas platyrhynchos]
           gi|2789654|gb|AAB96915
          Length = 422

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 575 WIIKEFLTSDDPDVRFLAETFIWHIVPVTNPDGYT 679
           WI   +    DP  + + E    HI+P  NPDG++
Sbjct: 72  WICDNY--KKDPLAQMIVENVHLHIMPSLNPDGFS 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,583,825
Number of Sequences: 28952
Number of extensions: 351518
Number of successful extensions: 837
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)