Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0407
         (568 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   0.79 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.4  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   4.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   4.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   4.2  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   4.2  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   5.6  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +1

Query: 184 PGLPASAELPMLLREPTTNKNAKSPSGHY*RRLRPDFWK 300
           P  PA +ELP L      N N  S +    R  +   WK
Sbjct: 72  PSPPAPSELPALKSRKLNNNNVVSSTNQEIRGPKRKTWK 110


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 166 TLLVLGPGLPASAELPMLLREPTTNKNAKSPSG 264
           TLLVLG         P+ +REP    +  + +G
Sbjct: 8   TLLVLGASAEDDTSGPVFVREPPNRIDFSNTTG 40


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 48  HMHGSYNMNNLHNDVAVINHNH 113
           H H +YN N L N     N+ H
Sbjct: 65  HNHQNYNSNVLSNGYGYGNYYH 86


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 48  HMHGSYNMNNLHNDVAVINHNH 113
           H H +YN N L N     N+ H
Sbjct: 65  HNHQNYNSNVLSNGYGYGNYYH 86


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 48  HMHGSYNMNNLHNDVAVINHNH 113
           H H +YN N L N     N+ H
Sbjct: 65  HNHQNYNSNVLSNGYGYGNYYH 86


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 48  HMHGSYNMNNLHNDVAVINHNH 113
           H H +YN N L N     N+ H
Sbjct: 65  HNHQNYNSNVLSNGYGYGNYYH 86


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 222 KQHRKFCRSRQP 187
           +QHR +C S QP
Sbjct: 230 EQHRSWCSSSQP 241


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,248
Number of Sequences: 336
Number of extensions: 1933
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)