Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0407
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0014 + 113638-113754,113836-113950,114570-114835,115365-11...    29   3.4  
01_01_0935 - 7377917-7378009,7378418-7378551,7378635-7379043,737...    29   3.4  
02_02_0549 + 11410129-11412180                                         28   6.0  
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864...    27   7.9  

>03_01_0014 +
           113638-113754,113836-113950,114570-114835,115365-115575,
           115915-115979,118723-118930,119457-119566,119663-119913,
           120250-120356,120442-120509,120624-120701,121070-121198,
           121341-121481,122297-122344,122648-122743,124071-124183,
           124441-124591,124745-124818,124913-125072,125356-125454,
           125532-125618,125761-125907
          Length = 946

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = -2

Query: 249 GVFVGCWLPKQHRKFCRSRQPRPKYQQSCCFHWLG*CAE 133
           G + G +  +  RK+     P       CC HW   C E
Sbjct: 149 GTYTGIFRQELQRKYHLKNSPCDPCMVHCCLHWCANCQE 187


>01_01_0935 -
           7377917-7378009,7378418-7378551,7378635-7379043,
           7379929-7380051
          Length = 252

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
 Frame = +3

Query: 144 NLASGSNNXXXXXXXXXXXXRTSDAASGANNQQKRQVAFRSLLTPSAPGLLE-----TL* 308
           N+A+ +NN            +    ASG N    R  A +S     AP +          
Sbjct: 33  NVAAAANNAKFNSATWAAPVKKGSLASGRNVCTNRVSAVKSASAKPAPAISRHESAPQKE 92

Query: 309 SLAPPSVLTALTVAAPAGET 368
           S+ PP VL+ +  AAPA  T
Sbjct: 93  SVIPPKVLSIVPTAAPAPVT 112


>02_02_0549 + 11410129-11412180
          Length = 683

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +3

Query: 9   IFSGGTRVTTSSVHMHGSYNMNNLHN-DVAVINHNHVGFNNNIQRINLASGSNN 167
           +F+G   V ++S H+  +  ++ + N D   IN+NHVG N N    +LAS  N+
Sbjct: 136 LFNGTGSVGSASNHLF-AVELDTIQNPDFRDINNNHVGININ----DLASRDND 184


>01_06_0801 -
           32085110-32085274,32086318-32086365,32086441-32086483,
           32086588-32086651,32086740-32086792,32086899-32086937,
           32087031-32087113,32087200-32087280
          Length = 191

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -2

Query: 258 RRLGVFVGCWLPKQHRKFCRSRQPRPKYQQSC--CFHWLG*CAECC 127
           RR G +     P + +K C  R  R  Y   C  C   LG CA+CC
Sbjct: 54  RRYGKYKPIVEPAKCQK-CGKRNVRQAYHNVCTACSKDLGICAKCC 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,426,361
Number of Sequences: 37544
Number of extensions: 228875
Number of successful extensions: 810
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)