Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0407
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10327| Best HMM Match : Trypsin (HMM E-Value=0)                     40   0.001
SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)                     33   0.16 
SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.50 
SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3)                     31   0.66 
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         29   2.6  
SB_45863| Best HMM Match : Peptidase_M10 (HMM E-Value=9e-31)           28   4.6  
SB_1165| Best HMM Match : Pkinase (HMM E-Value=5.6e-23)                28   4.6  
SB_36885| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_4148| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)                      27   8.1  
SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.1  
SB_50226| Best HMM Match : LEA_4 (HMM E-Value=0.18)                    27   8.1  
SB_34769| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_19561| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_10327| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 865

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 22/86 (25%), Positives = 40/86 (46%)
 Frame = +2

Query: 251 SRLQVITNAVCARTFGNTLIIGSTLCVDGSNGRSTCRXXXXXXXXXXXXXXRQLIGITSF 430
           S++ ++    C  T G T+   S +C  G+ G S C                 L G+ S+
Sbjct: 435 SKVPLVNYTTCRSTNGATVDENSMICAGGA-GSSACNGDSGGPLQCLENERWVLRGVASW 493

Query: 431 GSAQGCQRGFPAAFARVTSFNSWIRA 508
            +A+ C     + +ARV+S+++WI +
Sbjct: 494 VTAETCPGNTFSVYARVSSYSNWIES 519


>SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 800

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 20/84 (23%), Positives = 32/84 (38%)
 Frame = +2

Query: 251 SRLQVITNAVCARTFGNTLIIGSTLCVDGSNGRSTCRXXXXXXXXXXXXXXRQLIGITSF 430
           +R  V+ +  CA          +T+   G +G S C                 L G  S+
Sbjct: 459 ARTPVVDHETCAIKLDKFAADKTTMICAGGSGSSACSGDSGGPLVCHEGGTWVLRGAVSW 518

Query: 431 GSAQGCQRGFPAAFARVTSFNSWI 502
           G++  C      A+AR++S   WI
Sbjct: 519 GTSHSCPGRMFVAYARISSHIDWI 542


>SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +3

Query: 72  NNLHNDVAVINHNHVG-FNNNIQRINLASGSNN 167
           NN++N+  +IN+N++   NNNI  IN+   +NN
Sbjct: 409 NNINNNNIIINNNNIIIINNNIININIIINNNN 441



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +3

Query: 48  HMHGSYNMNNLHNDVAVINHNHVGFNNNIQRINLASGSNN 167
           H H +  +NN  N++ +IN+N++  NNNI   N+   +NN
Sbjct: 386 HHHQNIIINN--NNI-IINNNNIIINNNINNNNIIINNNN 422


>SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3)
          Length = 189

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 48  HMHGSYNMNNLHNDVAVINHNHVGFNNNIQRINLASGSNN 167
           +++ + N NN +N++  IN+N+   NNNI   N  + +NN
Sbjct: 92  NINNNNNNNNNNNNINNINNNNNNNNNNINNNNNNNNNNN 131



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 30  VTTSSVHMHGSYNMNNLHNDVAVINHNHVGFNNNIQRINLASGSNN 167
           +T +  + + + N ++ HN++   N+N+   NNNI  IN  + +NN
Sbjct: 73  ITNNKNNNNNNNNHHHHHNNINNNNNNN-NNNNNINNINNNNNNNN 117



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 48  HMHGSYNMNNLHNDVAVINHNHVGFNNNIQRINLASGSNN 167
           H H + N NN +N+    N N++  NNN    N+ + +NN
Sbjct: 88  HHHNNINNNNNNNNNNN-NINNINNNNNNNNNNINNNNNN 126


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 27   RVTTSSVHMHGSYNMNNLHNDVAVINHNHVGFNNNIQR-INLASGSNN 167
            R   +S++   + N N+++N+ + IN+N+   NNN    IN  S  NN
Sbjct: 1759 RNNNNSINNRNNTNNNSINNNNSSINNNNSSINNNNSSIINNNSSINN 1806


>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
 Frame = +2

Query: 257  LQVITNAVCARTFGNTLIIGSTLCVDGSNG--RSTCRXXXXXXXXXXXXXXRQLIGITSF 430
            + ++    C   + N   I + +   G  G  + TC+                L+G+TS+
Sbjct: 1935 IPLVDQRACEEQYRNLKPITARMRCAGIYGTPKGTCKGDSGGPLVCESKGRWVLMGVTSW 1994

Query: 431  GSAQGC-QRGFPAAFARVTSFNSWIR 505
             S  GC   G+   +A V  F  WIR
Sbjct: 1995 -SYNGCADSGYAGVYADVVYFKDWIR 2019


>SB_45863| Best HMM Match : Peptidase_M10 (HMM E-Value=9e-31)
          Length = 273

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 66  NMNNLHNDVAVINHNHVGFNNNIQRINLASGSNN 167
           N NN +N+    N+N++  NNNI   N  + +NN
Sbjct: 226 NNNNNNNNNINNNNNNINNNNNINNNNNINNNNN 259



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 21  GTRVTTSSVHMHGSYNMNNLHNDVAVINHNHVGFNNNIQRINLASGSNN 167
           GT V +S+ + + + N NN +N     N+N+   NNN   IN  +  NN
Sbjct: 207 GTLVNSSNNNNNNNNNNNNNNN-----NNNNNNINNNNNNINNNNNINN 250


>SB_1165| Best HMM Match : Pkinase (HMM E-Value=5.6e-23)
          Length = 560

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 180 KYQQSCCFHWLG*CAECC 127
           K+ Q+CC    G C+ECC
Sbjct: 236 KHSQTCCRRAFGGCSECC 253


>SB_36885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 54  HGSYNMNNLHNDVAVINHNHVGFNNNIQRINLASGSNN 167
           H  YN NN +N+    N+N+   NNN    N  + +NN
Sbjct: 14  HSRYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 51


>SB_4148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +3

Query: 36  TSSVHMHGSYNMNNLHNDVAVINHNHVGFNNNIQRINLASGSNNXXXXXXXXXXXXRTSD 215
           TSS + + S N NN  N+ +  + N+   NNN    + ++ +NN              S+
Sbjct: 13  TSSNNNNSSNNNNNDSNNSSNNSSNNNSNNNNRNNSSNSNSNNNNNNNNRNNNSNNNNSN 72

Query: 216 AASGANNQQKR 248
             S  NN+  R
Sbjct: 73  NNSNNNNRSNR 83


>SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)
          Length = 1710

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 15  SGGTRVTTSSVHMHGSYNMNNLHNDVAVINHNHVGFNNNIQRINLASGSNN 167
           SG +R+ + S     S N NN +N+    N+N+   NNN    N  + +NN
Sbjct: 349 SGSSRLPSWSPRQKLSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 399


>SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 6   NIFSGGTRVTTSSVHMHGSYNMNNLHNDVAVINHNHVGFNNN 131
           NI S       ++ H + + N +N HN+    NHN+   NNN
Sbjct: 171 NINSSNNNNDQNNNHNNNNNNNSNNHNNHKNNNHNNNNSNNN 212


>SB_50226| Best HMM Match : LEA_4 (HMM E-Value=0.18)
          Length = 760

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -2

Query: 360 LQVLRPLEPSTQRVEPMIRVFPKVRAQTALVMT*RRLGVFVGCWLPKQHRKFC 202
           +++L P+E + + V     +  KV  +T    + +   V  GC  PK  R  C
Sbjct: 140 IEILLPVEYTAENVATWSNLLQKVEERTCRATSRKAEQVAKGCHTPKNARATC 192


>SB_34769| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -2

Query: 336 PSTQRVEPMIRVFPKVRAQTALVMT*RRLGVFVGCWLPKQHRKFCRSRQP 187
           P  + +    +V    +  TA+++T   + VF  CWLP Q R+F +   P
Sbjct: 229 PGNENLLAQQKVNASSKKATAMLIT--VVVVFAVCWLPLQIREFLKLNAP 276


>SB_19561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 410

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 33  TTSSVHMHGSYNMNNLHND 89
           TTS +HMH S+N + L+ D
Sbjct: 170 TTSGLHMHDSHNQSYLYGD 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,611,086
Number of Sequences: 59808
Number of extensions: 263498
Number of successful extensions: 1606
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)