Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0407
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40030-6|AAA81135.3|  431|Caenorhabditis elegans Hypothetical pr...    30   1.0  
U40030-5|AAR12976.2|  506|Caenorhabditis elegans Hypothetical pr...    30   1.0  
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    30   1.0  
X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic int...    28   4.1  
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi...    28   4.1  
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi...    28   4.1  

>U40030-6|AAA81135.3|  431|Caenorhabditis elegans Hypothetical
           protein T13C2.3a protein.
          Length = 431

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +1

Query: 151 PVEATTLLVLGPGLPASAELPMLLREPTTNK 243
           PVE TT   L P LP S +LPM L + TT K
Sbjct: 173 PVETTTTTTLKPTLP-SLKLPMSLDDLTTTK 202


>U40030-5|AAR12976.2|  506|Caenorhabditis elegans Hypothetical
           protein T13C2.3b protein.
          Length = 506

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +1

Query: 151 PVEATTLLVLGPGLPASAELPMLLREPTTNK 243
           PVE TT   L P LP S +LPM L + TT K
Sbjct: 248 PVETTTTTTLKPTLP-SLKLPMSLDDLTTTK 277


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
 Frame = +2

Query: 236 PTKTPSRLQVITNAVCAR--TFGNTLIIGSTLCVDGSNGR-STCRXXXXXXXXXXXXXXR 406
           PT     + +++   C+    +   + + S LC   S G+  +C+               
Sbjct: 194 PTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAGYSYGKIDSCQGDSGGPLMCARDGHW 253

Query: 407 QLIGITSFGSAQGCQR-GFPAAFARVTSFNSWIRAE 511
           +L G+ S+G   GC R G P  +  V S ++WI  E
Sbjct: 254 ELTGVVSWGI--GCARPGMPGVYGNVHSASTWINLE 287


>X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 636

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 81  HNDVAVINHNHVGFNNNIQRINLASGSNN 167
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 203 HNEIALKNERSLNVSDLLQRINLLQTENN 231


>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform a protein.
          Length = 1128

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 81  HNDVAVINHNHVGFNNNIQRINLASGSNN 167
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857


>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform b protein.
          Length = 1248

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 81  HNDVAVINHNHVGFNNNIQRINLASGSNN 167
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,666,650
Number of Sequences: 27780
Number of extensions: 181762
Number of successful extensions: 607
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)