Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0407
         (568 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04310.1 68414.m00422 ethylene receptor-related similar to et...    29   2.9  
At5g38470.1 68418.m04650 DNA repair protein RAD23, putative simi...    28   5.0  
At2g45010.2 68415.m05605 expressed protein weak similarity to PG...    27   6.6  
At2g45010.1 68415.m05604 expressed protein weak similarity to PG...    27   6.6  

>At1g04310.1 68414.m00422 ethylene receptor-related similar to
           ethylene receptor CS-ETR2 [Cucumis sativus] GI:6136818;
           contains Pfam profiles PF01590: GAF domain, PF00512: His
           Kinase A (phosphoacceptor) domain
          Length = 645

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 118 PTWLWLMTATSLWRLFML*LPCIWTLEVVTLVP 20
           P W W+MTA +++++    +  +  L +VTL+P
Sbjct: 110 PHWPWVMTAVTVFKMLTGIVSFLTALSLVTLLP 142


>At5g38470.1 68418.m04650 DNA repair protein RAD23, putative similar
           to DNA repair by nucleotide excision (NER) RAD23
           protein, isoform I GI:1914683 from [Daucus carota]
          Length = 378

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 187 GLPASAELPMLLREPTTNKNAKSP 258
           G+PA AE+P + + P T + A +P
Sbjct: 189 GIPAQAEIPPVAQAPATGEQAANP 212


>At2g45010.2 68415.m05605 expressed protein weak similarity to
           PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam
           profile PF04749: Protein of unknown function, DUF614
          Length = 198

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = -2

Query: 249 GVFVGCWLPKQHRKFCRSRQPRPKYQQSCCFHWLG*CAE 133
           G++ G +  +  +K+     P       CC HW   C E
Sbjct: 102 GIYSGLFRQELQKKYHLKNAPCDHCMVHCCLHWCALCQE 140


>At2g45010.1 68415.m05604 expressed protein weak similarity to
           PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam
           profile PF04749: Protein of unknown function, DUF614
          Length = 244

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = -2

Query: 249 GVFVGCWLPKQHRKFCRSRQPRPKYQQSCCFHWLG*CAE 133
           G++ G +  +  +K+     P       CC HW   C E
Sbjct: 148 GIYSGLFRQELQKKYHLKNAPCDHCMVHCCLHWCALCQE 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,125,916
Number of Sequences: 28952
Number of extensions: 166493
Number of successful extensions: 517
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)