Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0405
         (612 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    28   0.054
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.66 
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    23   1.5  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   8.2  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 0.054
 Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
 Frame = +1

Query: 373 RSNSNIAYNNNVRPINIAGANYNLGDNQVVWAAG----W-GATSLGGSNSGNSVTSRSGP 537
           + NSN  Y++N +P    G     G   VV AA     W  ATS GG+N  NS+T    P
Sbjct: 84  QQNSN--YSSNSKPDCSKGNADQNGYASVVAAAAVKDVWQSATSGGGANLTNSLTGPVRP 141

Query: 538 SIRMPASNV 564
           +   P S V
Sbjct: 142 AACTPDSRV 150


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 524 DVTELPELDPPSDVAPQPA 468
           D T  PE DP   VAP+PA
Sbjct: 75  DGTTSPEPDPEIPVAPEPA 93


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 487 SLGGSNSGNSVTSRSGPSIRMPASNVTDPLTVLS 588
           S+GG N+GN++ +    S ++ AS ++  L+  S
Sbjct: 101 SIGGWNAGNAILNGIVASSKLRASLISSCLSFFS 134


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 570 VCNVGRRHSD*WSRPGRDGVARIRPSERCSTPTSS 466
           + N+    SD  S P       +  ++ CSTPT +
Sbjct: 406 IANLPSPGSDQRSTPSPRVYGNVNENQDCSTPTEN 440


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,201
Number of Sequences: 336
Number of extensions: 3806
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)