Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0405
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.70
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 28 0.93
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 26 3.7
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 26 4.9
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 26 4.9
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 25 6.5
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom... 25 8.6
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 25 8.6
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz... 25 8.6
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 8.6
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 28.7 bits (61), Expect = 0.70
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 409 RPINIAGANYNLGDNQVVWAAGWGATSLGGSNSGNSVTSRSGPSIRMPASNVTD 570
+P + G++ + G AAG GA + +N+G S T G + P N D
Sbjct: 348 QPGLLGGSSNSAGPIAAATAAGVGADASDAANTGGSFTRPQGARMVRPIGNPPD 401
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 28.3 bits (60), Expect = 0.93
Identities = 19/65 (29%), Positives = 36/65 (55%)
Frame = +1
Query: 370 LRSNSNIAYNNNVRPINIAGANYNLGDNQVVWAAGWGATSLGGSNSGNSVTSRSGPSIRM 549
++S +N+ + V P+ + +NY++G + +G A ++ SV S +G SIR+
Sbjct: 116 VKSENNL-FGRTVNPV-VKDSNYDVGGS-----SGGAAAAIAADICYASVGSDTGGSIRL 168
Query: 550 PASNV 564
PA+ V
Sbjct: 169 PAAYV 173
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -3
Query: 385 WNYCVRCRGHC-QQYVCYSWDE**FCSRYAQH 293
W C RC+G Q +C S D F R A+H
Sbjct: 1037 WTQCQRCQGSMHQDVICTSRDCPIFYMRIAEH 1068
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 176 SCGGNILNQRSILSAAHCPYGDA 244
+ GN+LN + S ++CPY A
Sbjct: 1451 TAAGNLLNPNATTSCSYCPYQTA 1473
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 4.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 149 TWNWNQWWQSCGG 187
T N+ WW SCGG
Sbjct: 114 TVNYPTWWDSCGG 126
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -2
Query: 605 AQHVSGDS--TVNGSVTLDAGILIDGPDLDVTELPE 504
A+ GDS + TLD+G++IDG + +EL E
Sbjct: 189 AKRHEGDSIKSTEHDSTLDSGVVIDGREKSSSELHE 224
>SPBC119.04 |mei3||meiosis inducing protein Mei3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 25.0 bits (52), Expect = 8.6
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -1
Query: 528 PGRDGVARIRPSERCSTPTSSPNNLVITKIVIGTSNINRTN 406
P R AR S R ST +SS N T GT+ I+ T+
Sbjct: 20 PNRTNTARRSTSPRTSTGSSSTNTNTKTVDHAGTTFISSTS 60
>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
Hat1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 382 NYCVRCRGHCQQYVCYSWDE 323
+YC+R G+C Y Y WD+
Sbjct: 173 DYCLR--GYCTVYKYYKWDK 190
>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 265
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 268 GSTFANSGGVVHNVNRIIIHPNYNRR 345
GS N GG++ N I HP R
Sbjct: 175 GSDMGNDGGMIPTFNHPIFHPENRSR 200
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 602 QHVSGDSTVNGSVTLDAGILIDGPDLDVTE 513
QH+SG S G +TLD+ +L D + VTE
Sbjct: 190 QHISGTSPSPGFITLDS-LLSDVNRMIVTE 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,806
Number of Sequences: 5004
Number of extensions: 56287
Number of successful extensions: 165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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