Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0405
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0671 - 24164490-24164544,24164920-24165086,24165787-241659... 30 1.3
03_02_0996 - 13082540-13082818,13083107-13083221,13084135-130842... 29 2.2
01_05_0302 + 20637139-20637291,20637390-20637476,20637609-206378... 29 2.2
06_03_0809 + 24814590-24816593 29 2.9
06_01_1145 - 9575173-9575553,9575712-9575858,9575971-9576024,957... 29 2.9
01_05_0612 - 23652121-23652400,23653031-23654427 29 3.8
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 28 5.1
10_08_0032 - 14288522-14290465 28 6.7
11_04_0009 - 12132781-12133272 27 8.9
05_01_0446 - 3551754-3551795,3551932-3552397,3552424-3552921,355... 27 8.9
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602... 27 8.9
03_02_0741 - 10857656-10857844,10858315-10858848,10859516-108598... 27 8.9
>01_05_0671 -
24164490-24164544,24164920-24165086,24165787-24165941,
24166291-24166458,24167471-24167552
Length = 208
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Frame = +1
Query: 16 YAVYHYFVGPW-AC---CCGGCSYQPTKDYWWLHD---QH*PVSRYSC 138
+ +YH+ GPW C C GG Y+ Y L D +H PV SC
Sbjct: 83 HEIYHWVAGPWMKCSSPCDGGVRYRDVACYGNLSDATIKHYPVDDASC 130
>03_02_0996 -
13082540-13082818,13083107-13083221,13084135-13084235,
13084890-13085117,13085789-13086106,13086200-13086484,
13086566-13086913
Length = 557
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 370 LRSNSNIAYNNNVRPINIAGANYNLGDNQVVWAAGWGATSLGGSNSGNSVTSR 528
L S +NN V +I G+N L +N ++ A +G SL N +TSR
Sbjct: 219 LLSGLEHCHNNGVLHRDIKGSNLLLDNNGMLKIADFGLASLFDPNKNQPMTSR 271
>01_05_0302 +
20637139-20637291,20637390-20637476,20637609-20637836,
20638014-20638184,20638843-20638896,20639028-20639174,
20639326-20639706
Length = 406
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 74 TNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGN 190
TNPQ +IGGS + ++ Y + Y +++ W GGN
Sbjct: 251 TNPQFVIGGSLSPVSIY---GSTQYEYDYLVWKDPAGGN 286
>06_03_0809 + 24814590-24816593
Length = 667
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = -2
Query: 605 AQHVSGDSTVNGSVTLDAGILIDGPDLDVTELPELDPPSDVAPQPA 468
A +++ DSTV T+ L P DVT LPE PPS AP PA
Sbjct: 218 ANNLTDDSTVYPFTTMLVP-LKHRPKPDVTVLPEPGPPSP-APAPA 261
>06_01_1145 -
9575173-9575553,9575712-9575858,9575971-9576024,
9576692-9576862,9577004-9577231,9577392-9577478,
9577600-9577761
Length = 409
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 74 TNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGN 190
TNPQ +IGGS + ++ Y Y +++ W GGN
Sbjct: 254 TNPQFVIGGSISPVSTY---GDTQYEYDYLVWKDPAGGN 289
>01_05_0612 - 23652121-23652400,23653031-23654427
Length = 558
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 268 GSTFANSGGVVHNVNRII--IHPNYNRRTADSD 360
G T A S ++R++ +HPN NR+T DSD
Sbjct: 64 GITVAFSAAAPPAISRLLFALHPNKNRQTTDSD 96
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 475 WGATSLGGSNSGNSVTSRSGPSIRMPASNVTDPLT 579
+GA + G S +S+ SRS PS+ P+S T
Sbjct: 243 FGAAAAAGQPSASSLVSRSRPSLTAPSSGALQRAT 277
>10_08_0032 - 14288522-14290465
Length = 647
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 262 RVGSTFANSGGVVH-NVNRIIIHPNYNRRTADSDLCILRSNSNIAY 396
R+G A++ ++ +VN+++IHP R+ + + + +AY
Sbjct: 465 RIGELVASNFSIIGVDVNQVVIHPRLGRKGYEMIIAFMNPEGMLAY 510
>11_04_0009 - 12132781-12133272
Length = 163
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 561 VGRRHSD*WSRPGRDGVARIRPSER 487
+GRR + W R RD RPS+R
Sbjct: 104 IGRRRGEAWRRERRDSKIESRPSQR 128
>05_01_0446 -
3551754-3551795,3551932-3552397,3552424-3552921,
3553288-3553334
Length = 350
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 415 INIAGANYNLGDNQVVWAAGWGATSLGGSNSGNSVTSRSGPS 540
I I+G+ + ++GWG S S+ G S + SGPS
Sbjct: 81 IGISGSTSSSAAAAAAGSSGWGKRSRPPSDEGTSDKTPSGPS 122
>03_05_0136 +
21158917-21159939,21160183-21160241,21160259-21160294,
21160345-21160387,21160582-21160698,21162090-21162179,
21162329-21162436,21162547-21162588
Length = 505
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 487 SLGGSNSGNSVTSRSGPSIRMPASNVTDPLTVLSPLTCCA 606
S SNSGN+ T ++ PS PA + P + S T A
Sbjct: 60 SSSSSNSGNTSTRKASPSPSSPAPAASTPSSSSSVATTLA 99
>03_02_0741 -
10857656-10857844,10858315-10858848,10859516-10859824,
10860521-10860622,10861446-10861613,10862734-10862847,
10863003-10863107,10863206-10863336,10863680-10863804,
10863890-10864061,10864411-10864505,10864771-10864841,
10864923-10865009,10865119-10865184,10865401-10865499,
10866631-10866672,10866757-10866822,10866910-10867101,
10867224-10867289,10868473-10868811
Length = 1023
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 183 PQDCHH*FQFHVYNKAAIPGYWLMLVVEPPIILCGLV 73
P+DCH + ++ PG+++ + V+ P +L LV
Sbjct: 108 PEDCHTVIALPLPHQPLFPGFFMAMSVKDPKLLKALV 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,136,688
Number of Sequences: 37544
Number of extensions: 416332
Number of successful extensions: 1314
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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