Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0405
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    48   5e-08
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.25 
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   5.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.5  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 48.4 bits (110), Expect = 5e-08
 Identities = 21/51 (41%), Positives = 34/51 (66%)
 Frame = +2

Query: 77  NPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHC 229
           NP RI+GG+ T IN++P +A +  T+   +    CG  I+++R +L+AAHC
Sbjct: 157 NPSRIVGGTNTGINEFPMMAGIKRTY---EPGMICGATIISKRYVLTAAHC 204



 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
 Frame = +1

Query: 295 VVHNVNRIIIHPNYNRRTAD----SDLCILRSNSNIAYNNNVRPINIAGANY-NLGDNQV 459
           V+H++N++IIHP Y+    D    +D+ +L++  +I + + V P  +   ++ +      
Sbjct: 232 VLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSD 291

Query: 460 VWAAGWGATSLGG 498
           V   GWG TS  G
Sbjct: 292 VTVLGWGHTSFNG 304


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
 Frame = -1

Query: 471  SSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSV--IVGMND--NSVHV 304
            ++  ++V+T +   T+ IN     VIS  G T     +  SSTS+  I    D  N V  
Sbjct: 825  TTEQSVVVTNV---TTTINTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVINDVKT 881

Query: 303  MHNTPTVGKGGTNTNTQRPVA 241
               T T  K  TN    +PVA
Sbjct: 882  QITTNTPAKKATNIG-GKPVA 901


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -1

Query: 474 TSSPNNLVITKIVIGTSNINRTNVVVISY 388
           +S+  N ++  +++GT  I  + +++ISY
Sbjct: 2   SSTEANELVMSVIVGTVVIVSSLIILISY 30


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 113  INQYPGIAALLYTWNWNQWWQ 175
            +  Y   AA + TWN  ++W+
Sbjct: 1178 LRPYLRTAAAILTWNEKRFWE 1198


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 259 IRVGSTFANSGGVVHNVNRIIIHPNYN 339
           +R  S   N GGV H  N  + H N++
Sbjct: 261 VRRDSRRKNYGGVYHLDNHHVHHANHH 287


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 67  SRHSSKPKGQQNN 29
           +RHSSK   Q NN
Sbjct: 432 ARHSSKSDNQNNN 444


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 376 SNSNIAYNNNVRPINIAGANYN 441
           SN  I  NNN    N    NYN
Sbjct: 86  SNKTIHNNNNYNNNNYNNYNYN 107


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +1

Query: 295 VVHNVNRIIIHPNYNRRTADSDLCILRSNSNIAYNNNVRPI 417
           ++ +++   IH N N +   ++     +N N  YNNN + +
Sbjct: 314 IISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKL 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,645
Number of Sequences: 438
Number of extensions: 4365
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)