Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0405
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ...    31   0.80 
At2g13790.1 68415.m01522 leucine-rich repeat family protein / pr...    29   2.4  
At5g27420.1 68418.m03273 zinc finger (C3HC4-type RING finger) fa...    29   3.2  
At2g48020.2 68415.m06011 sugar transporter, putative similar to ...    28   4.2  
At2g48020.1 68415.m06010 sugar transporter, putative similar to ...    28   4.2  
At2g29220.1 68415.m03551 lectin protein kinase, putative similar...    28   4.2  
At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein con...    28   5.6  
At5g41720.1 68418.m05073 F-box family protein contains Pfam PF00...    27   7.4  
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp...    27   7.4  
At1g05610.1 68414.m00581 glucose-1-phosphate adenylyltransferase...    27   9.8  

>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
           protein 
          Length = 710

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +1

Query: 388 IAYNNNVRPINIAGANYNLGDNQVVWAAGWG---ATSLGGSNSGNSVTSR 528
           +A NNN    N  G N+  G+N+      WG   A  +GG   G  + +R
Sbjct: 350 VANNNNNNNNNAIGGNFQGGENRGFGRGNWGRGNAQGMGGRGPGGPMRNR 399


>At2g13790.1 68415.m01522 leucine-rich repeat family protein /
           protein kinase family protein 
          Length = 620

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -2

Query: 596 VSGDSTVNGSVTLDAGILIDGPDLDVTELPELDPPSDVAPQP 471
           +SGD  VNGS +L   I      L  T+LPE  PP+  +P P
Sbjct: 182 LSGDIPVNGSFSLFTPISFANNSL--TDLPE-PPPTSTSPTP 220


>At5g27420.1 68418.m03273 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 zinc finger protein
           ATL6 [Arabidopsis thaliana]
           gi|4928403|gb|AAD33584.1|AF132016_1[4928403]; contains
           Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 368

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +1

Query: 478 GATSLGGSNS--GNSVTSRSGPSIR 546
           G+  LGG+ S  GNSVTS SG S+R
Sbjct: 289 GSIRLGGTGSVRGNSVTSPSGDSVR 313


>At2g48020.2 68415.m06011 sugar transporter, putative similar to
           ERD6 protein {Arabidopsis thaliana} GI:3123712,
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 463

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 71  PTNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCG 184
           P N + + GG  T +N + G  A+ YT+N+   W S G
Sbjct: 390 PINIKGVAGGMATLVNWF-GAWAVSYTFNFLMSWSSYG 426


>At2g48020.1 68415.m06010 sugar transporter, putative similar to
           ERD6 protein {Arabidopsis thaliana} GI:3123712,
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 463

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 71  PTNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCG 184
           P N + + GG  T +N + G  A+ YT+N+   W S G
Sbjct: 390 PINIKGVAGGMATLVNWF-GAWAVSYTFNFLMSWSSYG 426


>At2g29220.1 68415.m03551 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 627

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -2

Query: 530 DLDVTELPEL-DPPSDVAPQPA 468
           D D+T+LP L DPP  ++P P+
Sbjct: 269 DFDITKLPSLPDPPPTLSPSPS 290


>At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase BGQ60 precursor GB:A57512
           [Hordeum vulgare]; similar to beta-mannosidase enzyme
           (GI:17226270) [Lycopersicon esculentum]
          Length = 512

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 481 HPNQQPKQLGYHQDCN 434
           HP  +PK LGY QD N
Sbjct: 356 HPTTKPKDLGYQQDWN 371


>At5g41720.1 68418.m05073 F-box family protein contains Pfam
           PF00646: F-box domain; similar to unknown protein
           (gb|AAD32901.1);
          Length = 186

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 552 RHSD*WSRPGRDGVARIRPS 493
           R SD W+R GRDGV  +R S
Sbjct: 164 RVSDTWARVGRDGVYNLRES 183


>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein similar to human splicing
           factor GB:CAA59494 GI:899298 from [Homo sapiens];
           contains Pfam profile PF01805: Surp module
          Length = 735

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 536 GPDLDVTELPELDPPSDVAPQPAAQ 462
           G D+D TE P+LD  SD  P   AQ
Sbjct: 129 GTDVDDTEDPKLDDESDAKPDLQAQ 153


>At1g05610.1 68414.m00581 glucose-1-phosphate adenylyltransferase,
           putative / ADP-glucose pyrophosphorylase, putative
           (APS2) similar to SP|P52416 from [Vicia faba]; contains
           Pfam profile PF00483: Nucleotidyl transferase; identical
           to cDNA GI:31408039
          Length = 476

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -1

Query: 489 RCSTPTSSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIVG 328
           RC  P SS +  VIT  +IG   I    V+  S VG+    A+  +   S+IVG
Sbjct: 339 RC-LPPSSMSVAVITNSIIGDGCILDKCVIRGSVVGMRTRIADEVIVEDSIIVG 391


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,022,445
Number of Sequences: 28952
Number of extensions: 312344
Number of successful extensions: 999
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)