Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0402
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    29   0.68 
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    28   0.90 
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    27   2.1  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    27   2.1  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   2.1  
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    26   4.8  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    26   4.8  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   6.3  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   8.4  

>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 460 STSRRSTRCANPRLTALSIDRSTGPCPEPDRKDPALSLPEPLHPLMIER 314
           S+S  S   + PRL+  S  R+  P P    K P  S  +  H  +I+R
Sbjct: 457 SSSAPSVPVSAPRLSGKSASRNHVPSPPKGTKSPMASSEQAQHQQVIDR 505


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 243 SIAHTVHNDTLSRASRIMDTKELNEQHTQPIL 148
           S+  +VH +  S  S++++ K  NE+HT+ IL
Sbjct: 735 SLEKSVHKNYESLRSQLLEYKAANEKHTEAIL 766


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 246 HVVDADHSNRHHHGH 290
           H  D DH N  HHGH
Sbjct: 18  HTHDYDHHNHDHHGH 32


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 405 IDKAVKRGFAHRVERRDVDNPPPTNNITDFYQNYT 509
           +DK VK GFA    R   D  P  N  T+    YT
Sbjct: 324 LDKVVKLGFAGDRARAMTDTTPDANYSTNLLGKYT 358


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -3

Query: 463 LSTSRRSTRCANPRLTALSIDRSTGPCPEPDRKDPALSLPEPLHPLMIERNSSGSLS 293
           +ST   S+  ++P  + LS+D+S    P+ D    + SLP     L  + N SG+L+
Sbjct: 140 ISTLLSSSLTSSPSNSGLSLDKSLPSSPKGDSPSLSSSLPS----LTTKSNLSGNLN 192


>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 234 HTVHNDTLSRASRIMDTKELNEQHTQPIL 148
           +T+ NDT    +++M  +E++E+  QP+L
Sbjct: 133 NTLPNDTKIEYAKLMTEQEMDEEAGQPLL 161


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 127 KILCLMNQNGLCMLLVKFFC 186
           +I C +  N  C+L+V+FFC
Sbjct: 181 QIPCALAPNIACLLIVRFFC 200


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 121 IRSTINYIS*NHLSIHLIFR*ISQQFLKFCKH 26
           +   I Y + +  S H +F+ +  QFL+ C H
Sbjct: 345 LNELITYCAHDTYSTHQVFKKVFPQFLEVCPH 376


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 478 FVGGGLSTSRRSTRCANPRLTALSIDRSTGPCPEPDRKDPALSLPEP 338
           +V     +S RST  + PR T  S   S  P   P   +  L+ P P
Sbjct: 199 YVRSNSRSSARSTARSAPRSTQRSRSSSANPVTTPPVNNTLLTPPAP 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,325
Number of Sequences: 5004
Number of extensions: 53876
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)