Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0402
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0372 + 2895807-2895883,2896557-2896647,2896741-2896839,289... 32 0.40
02_05_0618 + 30400338-30400452,30400553-30400692,30400805-304010... 31 0.92
03_01_0312 + 2469096-2470862 30 1.2
01_03_0015 + 11669321-11670070 29 2.1
08_02_0833 - 21623721-21623821,21624076-21624667 29 2.8
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 29 2.8
07_03_0018 - 12490940-12491195,12491575-12491775,12492174-124924... 29 3.7
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 29 3.7
03_06_0226 + 32495088-32495237,32496189-32496351,32496438-324965... 29 3.7
05_07_0322 + 29249761-29250015,29250776-29250873,29251483-292515... 28 6.5
08_01_0111 + 850047-850218,850366-850649,851017-851763 27 8.6
>03_01_0372 +
2895807-2895883,2896557-2896647,2896741-2896839,
2897220-2897268,2897269-2897405,2898027-2898248,
2898335-2898488,2898574-2898723,2898890-2898978,
2899632-2899844,2900180-2900314,2900461-2900640,
2901004-2901111,2901215-2901340,2901421-2901550,
2901637-2901729,2902067-2902192,2902294-2902304
Length = 729
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 273 RHHHGHRDRLPLLFRSIISGCNGSGSESAGSLRSGSGQGPV 395
RH G D + L +S+ C+ G +RSGSG G V
Sbjct: 587 RHRQGLEDEILRLKQSLADNCSEESKALCGMVRSGSGLGSV 627
>02_05_0618 +
30400338-30400452,30400553-30400692,30400805-30401044,
30401157-30401693
Length = 343
Score = 30.7 bits (66), Expect = 0.92
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 222 CGQYAQC*HVVDADHSNRHHHGHRD 296
C YA V+ ADH + HHH H D
Sbjct: 303 CSYYADDAGVLFADHGHHHHHQHAD 327
>03_01_0312 + 2469096-2470862
Length = 588
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3
Query: 415 ALSIDRSTGPCPEPDR-KDPALSLPEP 338
A SI R+ P PEP+R DPA+ LP P
Sbjct: 51 AASIARAELPLPEPERVSDPAVPLPPP 77
>01_03_0015 + 11669321-11670070
Length = 249
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = -3
Query: 472 GGGLSTSRRSTRCANPRLT-ALSI-----DRSTGPCPEPDRKDPALSLPEPLHPLMIERN 311
GGG S R+TR RL +L+I DR GP P P DPA+ P+ +
Sbjct: 83 GGGHSGDSRTTRRRERRLLRSLAIGAGDDDRDGGPAPSPRGLDPAVLRALPVVVVAAAGA 142
Query: 310 SSGSLSRC 287
+ G + C
Sbjct: 143 APGDCAVC 150
>08_02_0833 - 21623721-21623821,21624076-21624667
Length = 230
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 329 WMQWLRQRKRRIFAVWLGTGSRAAINRQ--SGQTWIR 433
W W R+ RR + W G G R + R+ SG +W R
Sbjct: 90 WKAWCRRESRRWPSSWRGEGVRWRMRRERRSGVSWGR 126
>08_01_0033 +
244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 270 NRHHHGHRDRLPLLFRSIISGCNGSGSESAGSLRSGS 380
++H H +RD L + RS+ SG G+ES S +SGS
Sbjct: 127 SKHEHMNRDALSIDDRSVKSGDESDGAEST-SGKSGS 162
>07_03_0018 -
12490940-12491195,12491575-12491775,12492174-12492403,
12492624-12492744,12492823-12492972,12493106-12493314,
12494120-12494234,12494346-12494440,12494523-12494758,
12496182-12496338
Length = 589
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 216 YHCGQYAQC*HVVDADHSNRHHHGHRDRLPLLFRSI 323
YH GQY H +D D + H G R L + SI
Sbjct: 179 YHSGQYDSEEHFMDLDKKLKQHEGSRVSNRLFYLSI 214
>06_01_0520 +
3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 273 RHHHGHRDRLPLLFRSIISGCNGSGSESAGSLRSGSGQG 389
+HHH H+ R P+ S + G GS G R G G G
Sbjct: 70 KHHHHHQPRTPVAAESRATWRGGKGS---GKGRGGGGGG 105
>03_06_0226 +
32495088-32495237,32496189-32496351,32496438-32496576,
32496669-32496945,32497051-32497249,32497379-32497704
Length = 417
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 279 HHGHRDRLPLLFRSIISGCNGSGSESAGSLRSGSGQG 389
++G +L L + S CNG GS+S S++ QG
Sbjct: 131 YNGTSKKLSLSRNVLCSKCNGKGSKSGASMKCSGCQG 167
>05_07_0322 +
29249761-29250015,29250776-29250873,29251483-29251513,
29252225-29252324,29252449-29252519,29252852-29252917,
29253258-29253401,29253573-29253674
Length = 288
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 345 GSESAGSLRSGSGQGPVLRSIDKAVKRGFAHRVERRDVDNPPPTNNITDFYQNY 506
GS + G L P+L ID AV GF RR + + P + ++Y
Sbjct: 204 GSYTVGLLNVDGFYNPLLSFIDLAVNEGFITEEARRIIISAPTAKELVMKLEDY 257
>08_01_0111 + 850047-850218,850366-850649,851017-851763
Length = 400
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 258 ADHSNRHHHGHRDRLPLLFRSIISGCNGSGSES 356
ADH HHH HR ++ R + S NG+ S++
Sbjct: 303 ADHLLLHHH-HRTDWAMMDRLVASHLNGANSDA 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,581,677
Number of Sequences: 37544
Number of extensions: 366355
Number of successful extensions: 1310
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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