Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0402
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36014| Best HMM Match : DUF437 (HMM E-Value=6.4)                    33   0.18 
SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_25818| Best HMM Match : Pkinase (HMM E-Value=1.7e-20)               29   3.8  
SB_54503| Best HMM Match : DUF753 (HMM E-Value=4.7)                    28   5.0  
SB_14518| Best HMM Match : MIB_HERC2 (HMM E-Value=2.4e-38)             28   5.0  
SB_8375| Best HMM Match : NUC153 (HMM E-Value=2.9)                     28   5.0  

>SB_36014| Best HMM Match : DUF437 (HMM E-Value=6.4)
          Length = 240

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
 Frame = -3

Query: 478 FVGGGLSTSRRSTRCANPRLTALSIDRSTGPCPE-----PDRKDPALSLPEPLHPLMIER 314
           +V  G S SRR    A+ +L  L +D    PCP+     P +  P    P P    M+ +
Sbjct: 54  WVTPGFSQSRRCKTTASAKLACLQVDSRGSPCPQRLAPPPKQGHPPWDQPIPGKASMVMK 113

Query: 313 NSSGSLSRCP 284
             +  L R P
Sbjct: 114 KYAQFLMRAP 123


>SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3307

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 18/30 (60%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +3

Query: 342  SGSESAGSLRSGSGQGPV-LRSIDKAVKRG 428
            SGS+ + SL  G GQGP+ LR I+KAVK G
Sbjct: 2471 SGSKLS-SLSLGQGQGPIALRMIEKAVKDG 2499


>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1266

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +3

Query: 279 HHGHRDRLPLLFRSIISGCNGSGSESAGSLRSGSGQGPVLRSIDKAVKRGFAHRV-ERRD 455
           +H  + R  +  RS+++  +   S +  S  S         S+  + +R F+ +  +   
Sbjct: 768 YHSSKSRRSVSLRSVVTEYSSYPSRAMSSRFSSRRGSEASLSLYTSSERRFSWKAGDEMI 827

Query: 456 VDNPPPTNNITDFYQN 503
           +D PPP  NIT+   N
Sbjct: 828 MDKPPPQINITETQDN 843


>SB_25818| Best HMM Match : Pkinase (HMM E-Value=1.7e-20)
          Length = 956

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 382 PEPDRKDPALSLPEPLHPLMIERNSSGSLSR 290
           P+PDR+ P + +PE   P +I   S    SR
Sbjct: 450 PDPDREQPPVFVPESRDPEVIRAQSDAERSR 480


>SB_54503| Best HMM Match : DUF753 (HMM E-Value=4.7)
          Length = 141

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 478 FVGGGLSTSRRSTRCANPRLTALSIDRSTGPCPEPDR 368
           +V  G S SRR    A+ +L  L +D    P P  DR
Sbjct: 54  WVTPGFSQSRRCKTTASAKLACLQVDSRGSPFPPDDR 90


>SB_14518| Best HMM Match : MIB_HERC2 (HMM E-Value=2.4e-38)
          Length = 742

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 183 LYP*FLMPWKEYHCGQYAQC*HVVDADHSNRHHHGHR 293
           + P F M WK   CG Y  C       H ++HH  HR
Sbjct: 7   MQPIFGMRWKCAECGNYDLC---STCYHGDKHHLRHR 40


>SB_8375| Best HMM Match : NUC153 (HMM E-Value=2.9)
          Length = 433

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +3

Query: 327 SGCNGSGSESAGSLRSGSGQGPVLRSIDKAVKRGFAHRVERRDVDNPPPTNNITDFYQNY 506
           SGCN  G+E   S++SG G    +  +D   K    ++V  +D+DN    + IT    + 
Sbjct: 98  SGCNKFGNELNTSIKSGIGVEKRINKLD-VHKHNDDNKV-TKDLDNIKDQHRITPKCVSN 155

Query: 507 TVCSILQIQQN 539
           T  + ++I  +
Sbjct: 156 TTITTVEISDD 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,426,891
Number of Sequences: 59808
Number of extensions: 423607
Number of successful extensions: 1048
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)