Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0402
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein ...    24   6.7  
AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 prote...    24   6.7  

>U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein 756
           protein.
          Length = 425

 Score = 23.8 bits (49), Expect(2) = 6.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 249 VVDADHSNRHHHGH 290
           V  A H N HHH H
Sbjct: 372 VTQAPHHNSHHHHH 385



 Score = 22.2 bits (45), Expect(2) = 6.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 264 HSNRHHHGHRDRL 302
           H++ HHH H  R+
Sbjct: 378 HNSHHHHHHHPRV 390


>AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 protein
           protein.
          Length = 425

 Score = 23.8 bits (49), Expect(2) = 6.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 249 VVDADHSNRHHHGH 290
           V  A H N HHH H
Sbjct: 372 VTQAPHHNSHHHHH 385



 Score = 22.2 bits (45), Expect(2) = 6.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 264 HSNRHHHGHRDRL 302
           H++ HHH H  R+
Sbjct: 378 HNSHHHHHHHPRV 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,545,285
Number of Sequences: 27780
Number of extensions: 314088
Number of successful extensions: 1025
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)