Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0402
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.3  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   4.0  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   4.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   4.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   6.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.2  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 396 LRSIDKAVKRGFAHRVERRDVDNPPPTNNIT 488
           L ++++  +R +  RVER  +  PP +N ++
Sbjct: 414 LEAVEEERQREYGIRVERDPILTPPSSNPVS 444


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 318 SIISGCNGSGSESAGSLRSGS 380
           S I+G   SGS SA +L SGS
Sbjct: 593 SPINGSGASGSGSAENLSSGS 613


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 304 HYCFVQSSVDAMAQAAKAQDLCGLARDR 387
           H C +  + D +   A   +LC +A DR
Sbjct: 107 HLCKLWLTCDVLCCTASILNLCAIALDR 134


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 304 HYCFVQSSVDAMAQAAKAQDLCGLARDR 387
           H C +  + D +   A   +LC +A DR
Sbjct: 107 HLCKLWLTCDVLCCTASILNLCAIALDR 134


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 304 HYCFVQSSVDAMAQAAKAQDLCGLARDR 387
           H C +  + D +   A   +LC +A DR
Sbjct: 107 HLCKLWLTCDVLCCTASILNLCAIALDR 134


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 456 VDNPPPTNNITDFYQN 503
           VDNP  T N+   Y N
Sbjct: 312 VDNPESTGNLVYIYNN 327


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 307 YCFVQSSVDAMAQAAKAQDLCGLARDR 387
           +C    + D M   A   +LC ++ DR
Sbjct: 97  FCDTWIAFDVMCSTASILNLCAISLDR 123


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -3

Query: 415 ALSIDRSTGPCPEPDRKDPALSLPEPLHPLMIERNSSGSLSR 290
           +L ++ S     E     P+L   + LHP  +E  + GS  R
Sbjct: 402 SLFVETSASELVESSVLFPSLDSRDELHPRELEAVNLGSACR 443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,101
Number of Sequences: 438
Number of extensions: 3994
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)